Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A33 F60 I1 R1
|
23 |
100.4 |
3424510 |
99.4% |
3403962 |
139.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
4,082,677 |
Δ204 bp |
|
[fdoH]–[fdoG] |
[fdoH], [fdoG] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
4082677 |
4082880 |
204 |
102 [0] |
[0] 101 |
[fdoH]–[fdoG] |
[fdoH],[fdoG] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4082676 | 0 (0.000) | 101 (1.000) |
54/276 |
0.4 |
100% |
coding (84/903 nt) |
fdoH |
formate dehydrogenase O subunit beta |
| ? | NC_000913 |
4082881 = |
0 (0.000) | coding (2942/3051 nt) |
fdoG |
formate dehydrogenase O subunit alpha |
GATK/CNVnator alignment
N/A
