Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F60 I1 R1
|
20 |
86.3 |
2971396 |
99.1% |
2944653 |
139.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,811,002 |
Δ15 bp |
coding (137‑151/810 nt) |
mutM ← |
DNA‑formamidopyrimidine glycosylase |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3811002 |
3811016 |
15 |
81 [0] |
[0] 80 |
mutM |
DNA‑formamidopyrimidine glycosylase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3811001 | 0 (0.000) | 80 (0.910) |
58/276 |
0.2 |
100% |
coding (152/810 nt) |
mutM |
DNA‑formamidopyrimidine glycosylase |
| ? | NC_000913 |
3811017 = |
0 (0.000) | coding (136/810 nt) |
mutM |
DNA‑formamidopyrimidine glycosylase |
GATK/CNVnator alignment
N/A
