Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F60 I1 R1 18 148.4 5087586 98.9% 5031622 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC NC_000913 4,094,443 Δ184 bp between other rhaD ← / ← rhaA rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4094439–4094512 4094615–4094547 36–177 44 [43] [42] 45 rhaD/rhaA rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase

GATK/CNVnator alignment

N/A