Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A27 F60 I1 R1 22 95.6 3256924 99.1% 3227611 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,354,157 T→C intergenic (‑107/‑568) yhcC ← / → gltB radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,354,1570TC100.0% 328.0 / NA 86intergenic (‑107/‑568)yhcC/gltBradical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (46/40);  total (46/40)

AACATATTGACTAATTTCTGTAACTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAGGCAGTAT  >  NC_000913/3354022‑3354291
                                                                                                                                       |                                                                                                                                      
aaCATATTGACTAATTTCTGTAACTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCTAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCGATCGTCCCGGCCTGCTTTTATCAACTGCATaaccaat                                                                                                                                    >  1:940547/1‑140 (MQ=255)
aaCATATTGACTAATTTCTGTAACTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCTATCGTCCCGGCATGCTTTTATCAACTGCATaaccaat                                                                                                                                    >  1:625612/1‑140 (MQ=255)
aaCATATTGACTAATTTCTGTAACTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATaaccaat                                                                                                                                    >  2:1300003/1‑140 (MQ=255)
     atTGACTAATTTCTGTAACTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATGGTCACGGCCTGCTTTTGTCAATTGCATAACCAATCaaaa                                                                                                                               >  2:520715/1‑140 (MQ=255)
          cTAATTTCTGTAACTCCATAATTTGCTAGGCCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTAcc                                                                                                                          <  1:520715/140‑1 (MQ=255)
           tAATTTCTGTAACTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCg                                                                                                                         <  2:1410166/140‑1 (MQ=255)
            aaTTTCTGTAACTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGa                                                                                                                        >  2:1030707/1‑140 (MQ=255)
               ttCTGTAACTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGTTTTTATCGACTGCAGAACCAAGCAAAATTACCGAAAt                                                                                                                     >  1:414466/1‑140 (MQ=255)
               ttCTGTAACTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGATTTTATCCACTACATAACCAATCAAAATTACCGAAAt                                                                                                                     >  1:653440/1‑140 (MQ=255)
                     aaCTGCATAATCTGATACACCGCGCCTTGAATAGACGCCCAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATg                                                                                                               <  2:414466/140‑1 (MQ=255)
                     aaCTGCATAATCTGATACACCGCGCCTTGAAAAGAAGCCAAAGCCTGCGATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATg                                                                                                               <  2:625612/140‑1 (MQ=255)
                      aCTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGc                                                                                                              >  2:1170596/1‑140 (MQ=255)
                         gCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATa                                                                                                           >  2:1607880/1‑140 (MQ=255)
                          cATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCAt                                                                                                            <  1:1004118/138‑1 (MQ=255)
                          cATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCAt                                                                                                            >  2:1004118/1‑138 (MQ=255)
                          cATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATaa                                                                                                          <  2:59704/140‑1 (MQ=255)
                               tCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATcaca                                                                                                     <  1:208432/140‑1 (MQ=255)
                                  gATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATg                                                                                                               >  1:1179711/1‑127 (MQ=255)
                                  gATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATg                                                                                                               <  2:1179711/127‑1 (MQ=255)
                                    tAGACCGCGCCTTGAAAGGAGGCCAAAGCCTGCCAGTTTGAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAAt                                                                                                <  2:658365/140‑1 (MQ=255)
                                    tAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAAt                                                                                                >  2:16056/1‑140 (MQ=255)
                                    tAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAAt                                                                                                >  1:270431/1‑140 (MQ=255)
                                       aCCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGTATAACCAAGCAATATTGCCGAAATTTCATGAATAATCACATAAATCAc                                                                                             >  2:488413/1‑140 (MQ=255)
                                       aCCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAGTTTCATGCATAATCACATAAATCAc                                                                                             >  1:622872/1‑140 (MQ=255)
                                       aCCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCAc                                                                                             >  2:352747/1‑140 (MQ=255)
                                       aCCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCAc                                                                                             >  2:1030072/1‑140 (MQ=255)
                                       aCCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCAc                                                                                             <  1:1170596/140‑1 (MQ=255)
                                       aCCGCGCCTTGAAAAGACGCCAAAGCCTGCCGTTTGTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCAc                                                                                             <  2:622872/140‑1 (MQ=255)
                                        ccGCGCCTTGAAAAGAGGCCAAGGCATGCTATTTTTATCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACt                                                                                            <  1:488413/140‑1 (MQ=255)
                                        ccGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACt                                                                                            <  1:1030072/140‑1 (MQ=255)
                                         cgcgCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACtt                                                                                           >  1:863047/1‑140 (MQ=255)
                                         cgcgCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACtt                                                                                           >  2:1223830/1‑140 (MQ=255)
                                          gcgcCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACt                                                                                            <  2:153656/138‑1 (MQ=255)
                                          gcgcCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACt                                                                                            >  1:153656/1‑138 (MQ=255)
                                           cgcCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACtttt                                                                                         >  2:819567/1‑140 (MQ=255)
                                           cgcCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACtttt                                                                                         >  1:1372811/1‑140 (MQ=255)
                                           cgcCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACt                                                                                            >  1:1126220/1‑137 (MQ=255)
                                           cgcCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACt                                                                                            <  2:1126220/137‑1 (MQ=255)
                                                 gAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTAt                                                                                   >  1:412610/1‑140 (MQ=255)
                                                     agagGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTtg                                                                               >  1:247748/1‑140 (MQ=255)
                                                        ggCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTgtgt                                                                            >  2:1125305/1‑140 (MQ=255)
                                                        ggCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCAGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTTCCGAAATTTCATGCATGATCACATAGATCAGTTTTGCTTATCTTgtgt                                                                            >  2:450481/1‑140 (MQ=255)
                                                             aaGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGAt                                                                       <  2:1004585/140‑1 (MQ=255)
                                                              aGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGAtt                                                                      <  2:1348591/140‑1 (MQ=255)
                                                                 cTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGAttttt                                                                   >  2:1567704/1‑140 (MQ=255)
                                                                   gCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCCTGCATAATCACATAAATCACTTTTGTTTATTTTGTGTCAGAttttttt                                                                 >  2:446749/1‑140 (MQ=255)
                                                                   gCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGAttttttt                                                                 >  2:1586364/1‑140 (MQ=255)
                                                                    ccATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTa                                                                <  1:819567/140‑1 (MQ=255)
                                                                     cATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTAt                                                               <  1:60054/140‑1 (MQ=255)
                                                                      aTTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTAtc                                                              <  1:1385783/140‑1 (MQ=255)
                                                                      aTTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTAtc                                                              <  1:1228486/140‑1 (MQ=255)
                                                                      aTTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTAtc                                                              <  2:247748/140‑1 (MQ=255)
                                                                        ttttAGCTCAATTCGGCGATGACCTGGATCGATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATCAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTAtctc                                                            <  2:940547/140‑1 (MQ=255)
                                                                                   ttCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGAttt                                                 >  2:1187003/1‑140 (MQ=255)
                                                                                      ggCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAg                                              <  1:1300003/140‑1 (MQ=255)
                                                                                        cGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGc                                            <  1:965212/140‑1 (MQ=255)
                                                                                          aTGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCaa                                          <  2:412610/140‑1 (MQ=255)
                                                                                           tGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCaaa                                         <  1:1607880/140‑1 (MQ=255)
                                                                                           tGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCaaa                                         <  1:1187003/140‑1 (MQ=255)
                                                                                             aCCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGc                                            <  1:1174133/135‑1 (MQ=255)
                                                                                             aCCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGc                                            >  2:1174133/1‑135 (MQ=255)
                                                                                                       aTCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATTGATTTTAGGCAAAAACAGTAGCATg                             >  1:1128828/1‑140 (MQ=255)
                                                                                                       aTCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATg                             >  2:798276/1‑140 (MQ=255)
                                                                                                       aTCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATg                             >  2:1333891/1‑140 (MQ=255)
                                                                                                       aTCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATg                             >  2:821245/1‑140 (MQ=255)
                                                                                                       aTCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATg                             >  1:200688/1‑140 (MQ=255)
                                                                                                       aTCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTGTATCTCCGGATCGAGTTTAGGGAAAAACAGTAGCATg                             >  1:464559/1‑140 (MQ=255)
                                                                                                       aTCGTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTATCAGATTTTTTTATATCCTGATGGAATTTACTCAAAAACTGTAGCATg                             >  2:758252/1‑140 (MQ=255)
                                                                                                        tCGTCCCGGCCTGCTTTTATCAACTGTATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGa                            >  1:19277/1‑140 (MQ=255)
                                                                                                          gTCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGaaa                          <  1:901519/140‑1 (MQ=255)
                                                                                                           tCCCGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAAc                         <  1:1567704/140‑1 (MQ=255)
                                                                                                            cccGGCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACg                        >  1:1314357/1‑140 (MQ=255)
                                                                                                                gCCTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCAt                    <  1:798276/140‑1 (MQ=255)
                                                                                                                  cTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTa                  <  1:16056/140‑1 (MQ=255)
                                                                                                                  cTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTa                  <  1:1125305/140‑1 (MQ=255)
                                                                                                                  cTGCTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTa                  <  1:821245/140‑1 (MQ=255)
                                                                                                                     cTTTTATCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATTGATGTTAGGCAAAAACTGTAGTATGAAACGTCATTACCa               >  2:698229/1‑140 (MQ=255)
                                                                                                                          aTCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTaa          >  2:1071374/1‑140 (MQ=255)
                                                                                                                           tCAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAg         <  1:1071374/140‑1 (MQ=255)
                                                                                                                            cAACTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAgg        <  1:4241/140‑1 (MQ=255)
                                                                                                                            cAACTGCATAACCAAGCAAAATCACTGAACTTTCATGAATAATCACATAAATCGCTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAgg        <  1:758252/140‑1 (MQ=255)
                                                                                                                               cTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAgg        >  1:889170/1‑137 (MQ=255)
                                                                                                                               cTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAgg        <  2:889170/137‑1 (MQ=255)
                                                                                                                               cTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAGGCAg     >  1:1265105/1‑140 (MQ=255)
                                                                                                                               cTGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAGGCAg     >  1:131882/1‑140 (MQ=255)
                                                                                                                                tGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAAt             >  1:1195469/1‑131 (MQ=255)
                                                                                                                                tGCATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAAt             <  2:1195469/131‑1 (MQ=255)
                                                                                                                                  cATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAGGCAGtat  >  1:1189688/1‑140 (MQ=255)
                                                                                                                                  cATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAGGCAGtat  >  2:1531137/1‑140 (MQ=255)
                                                                                                                                  cATAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAGGCAGtat  >  2:1183845/1‑140 (MQ=255)
                                                                                                                                    tAACCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAGGCa      <  1:1363950/134‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                      
AACATATTGACTAATTTCTGTAACTGCATAATCTGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTGTGTCAGATTTTTTTATCTCCTGATGGATTTTAGGCAAAAACAGTAGCATGAAACGTCATTACCAATTAAGGCAGTAT  >  NC_000913/3354022‑3354291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A