Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,551,796 A→G D54G (GAC→GGC)  uxuA → D‑mannonate dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,551,7960AG100.0% 325.1 / NA 86D54G (GAC→GGC) uxuAD‑mannonate dehydratase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (30/56);  total (30/56)

GCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAGTGTGGCATTCGCA  >  NC_000913/4551661‑4551930
                                                                                                                                       |                                                                                                                                      
gCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCa                                                                                                                                    >  1:104180/1‑140 (MQ=255)
 cccAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAg                                                                                                                                   <  1:453544/140‑1 (MQ=255)
   cAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGc                                                                                                                                 >  1:1310387/1‑140 (MQ=255)
    aaaCGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCGTTGAAGGCGCAGGcc                                                                                                                                <  1:694495/140‑1 (MQ=255)
     aaCGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCt                                                                                                                               >  1:975202/1‑140 (MQ=255)
     aaCGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCt                                                                                                                               >  1:161460/1‑140 (MQ=255)
        gATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGgt                                                                                                                            <  1:1395915/140‑1 (MQ=255)
         aTCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGgtg                                                                                                                           <  1:985261/140‑1 (MQ=255)
          tCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGgtgt                                                                                                                          >  2:1035588/1‑140 (MQ=255)
           ccGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGtgtg                                                                                                                         >  1:423582/1‑140 (MQ=255)
           ccGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGtgtg                                                                                                                         >  2:1301474/1‑140 (MQ=255)
           ccGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGtgtg                                                                                                                         <  2:1454843/140‑1 (MQ=255)
           ccGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGtgtg                                                                                                                         >  2:187569/1‑140 (MQ=255)
           ccGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAAGCCTGGtgtg                                                                                                                         >  2:1419525/1‑140 (MQ=255)
             ggTTTCTTTAGCTGATGTGCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:1167271/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTGTGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  2:217690/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  2:586528/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  2:993171/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  2:804700/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  2:726754/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:747187/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:775016/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:789622/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:847017/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:88943/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:984497/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  2:1108400/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  2:116592/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  2:1448479/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:1312362/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:1329961/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:1296197/140‑1 (MQ=255)
             ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGt                                                                                                                       <  1:1094419/140‑1 (MQ=255)
                             gTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGt                                                                                                       <  2:575183/140‑1 (MQ=255)
                              tCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTg                                                                                                      <  2:1176798/140‑1 (MQ=255)
                                cGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGGGTGGTCTGTCGTAGAAAGCGTGcc                                                                                                    >  1:1323884/1‑140 (MQ=255)
                                        gggcgCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACg                                                                                            <  1:584236/140‑1 (MQ=255)
                                               aCTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGatat                                                                                     <  1:435936/140‑1 (MQ=255)
                                                cTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATc                                                                                    >  2:373544/1‑140 (MQ=255)
                                                cTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATc                                                                                    <  2:830381/140‑1 (MQ=255)
                                                 tGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCa                                                                                   <  1:1330632/140‑1 (MQ=255)
                                                     gTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAAc                                                                               <  1:87703/140‑1 (MQ=255)
                                                        gTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCca                                                                            >  2:591289/1‑140 (MQ=255)
                                                         ttACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCcac                                                                           <  2:812088/140‑1 (MQ=255)
                                                         ttACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCcac                                                                           <  2:1311739/140‑1 (MQ=255)
                                                            ccGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATGGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACt                                                                        <  2:382909/140‑1 (MQ=255)
                                                             cgcgCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTg                                                                       >  2:1133057/1‑140 (MQ=255)
                                                              gcgcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTgg                                                                      <  2:288010/140‑1 (MQ=255)
                                                              gcgcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTgg                                                                      <  2:975202/140‑1 (MQ=255)
                                                                gcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCa                                                                    <  2:1310387/140‑1 (MQ=255)
                                                                gcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCa                                                                    <  1:394406/140‑1 (MQ=255)
                                                                 cTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCACAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCaa                                                                   >  1:396106/1‑140 (MQ=255)
                                                                    cACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTa                                                                <  1:1009742/140‑1 (MQ=255)
                                                                     aCCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTAt                                                               <  1:1094311/140‑1 (MQ=255)
                                                                     aCCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTAt                                                               <  2:423582/140‑1 (MQ=255)
                                                                         tatCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGTTCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGc                                                           <  2:1323884/140‑1 (MQ=255)
                                                                          atCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCa                                                          >  1:791739/1‑140 (MQ=255)
                                                                            cccGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGt                                                        >  2:1260527/1‑140 (MQ=255)
                                                                              cGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTgg                                                      >  2:1361401/1‑140 (MQ=255)
                                                                              cGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTgg                                                      >  2:361886/1‑140 (MQ=255)
                                                                                aaCGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGAt                                                    >  1:1323283/1‑140 (MQ=255)
                                                                                   ggCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGc                                                 <  1:964992/140‑1 (MQ=255)
                                                                                    gCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAATATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCt                                                <  1:390728/140‑1 (MQ=255)
                                                                                               tCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACACACACTGGCAACTATGAGCAGTGGATCGCTAACTATcagca                                     >  2:919381/1‑140 (MQ=255)
                                                                                                  gTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGAc                                  <  1:1131432/140‑1 (MQ=255)
                                                                                                   ttGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGAct                                 >  2:1211403/1‑140 (MQ=255)
                                                                                                   ttGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGAct                                 >  1:312860/1‑140 (MQ=255)
                                                                                                   ttGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGAct                                 <  2:1404242/140‑1 (MQ=255)
                                                                                                    tGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGActc                                >  1:804979/1‑140 (MQ=255)
                                                                                                    tGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGActc                                >  1:771746/1‑140 (MQ=255)
                                                                                                        gagaTCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTgcg                            <  1:1182525/140‑1 (MQ=255)
                                                                                                           aTCCTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCaa                         >  2:106164/1‑140 (MQ=255)
                                                                                                             ccTCAAACGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAAcc                       >  1:267374/1‑140 (MQ=255)
                                                                                                                  aaCGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGgcg                  <  1:1260527/140‑1 (MQ=255)
                                                                                                                  aaCGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGgcg                  <  1:33982/140‑1 (MQ=255)
                                                                                                                    cGCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCa                <  2:1323283/140‑1 (MQ=255)
                                                                                                                     gCAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAg               >  1:204649/1‑140 (MQ=255)
                                                                                                                      cAAGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCCCACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAgt              <  2:455233/140‑1 (MQ=255)
                                                                                                                        aGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAgtgt            <  1:1269308/140‑1 (MQ=255)
                                                                                                                        aGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAgtgt            <  1:1281773/140‑1 (MQ=255)
                                                                                                                        aGGCGATCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAgtgt            <  2:791739/140‑1 (MQ=255)
                                                                                                                             aTCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAGTGTGGCAt       >  2:330721/1‑140 (MQ=255)
                                                                                                                              tCATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAGTGTGGCAtt      >  1:44942/1‑140 (MQ=255)
                                                                                                                               cATTGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAGTGTGGCATTc     >  1:234005/1‑140 (MQ=255)
                                                                                                                                 ttGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAGTGTGGCATTCGc   <  2:1256366/140‑1 (MQ=255)
                                                                                                                                  tGAAGGCGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAGTGTGGCATTCGCa  <  1:1361401/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                      
GCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCGCAACCTGGCGCAGTGTGGCATTCGCA  >  NC_000913/4551661‑4551930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A