Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 116 98.7 3298914 99.2% 3272522 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,383,874 A→G G12G (GGA→GGG)  yjeM → putative transporter YjeM

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,383,8740AG99.1% 427.4 / ‑4.8 113G12G (GGA→GGG) yjeMputative transporter YjeM
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (59/53);  total (60/53)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01

Only 100 of 114 total aligned reads displayed.

AGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAAT  >  NC_000913/4383738‑4384005
                                                                                                                                        |                                                                                                                                   
 ggTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCa                                                                                                                                 <  1:1080405/140‑1 (MQ=255)
  gTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCat                                                                                                                                >  1:961124/1‑140 (MQ=255)
  gTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCat                                                                                                                                <  2:155129/140‑1 (MQ=255)
    aTCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCatat                                                                                                                              >  2:166214/1‑140 (MQ=255)
     tCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATAtt                                                                                                                             >  2:307354/1‑140 (MQ=255)
      cAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATtg                                                                                                                            >  2:617623/1‑140 (MQ=255)
       aaTTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATtga                                                                                                                           >  2:946253/1‑140 (MQ=255)
       aaTTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATtga                                                                                                                           >  1:342797/1‑140 (MQ=255)
       aaTTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATtga                                                                                                                           >  2:1615652/1‑140 (MQ=255)
                ttGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTa                                                                                                                  >  2:1545528/1‑140 (MQ=255)
                   gTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACtt                                                                                                               <  1:1477550/140‑1 (MQ=255)
                   gTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACtt                                                                                                               >  2:203817/1‑140 (MQ=255)
                   gTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACtt                                                                                                               <  2:291511/140‑1 (MQ=255)
                    tttttACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTc                                                                                                              <  1:1269823/140‑1 (MQ=255)
                      tttACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCg                                                                                                            >  2:425128/1‑140 (MQ=255)
                        tACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTa                                                                                                          >  2:174410/1‑140 (MQ=255)
                        tACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTa                                                                                                          >  2:514595/1‑140 (MQ=255)
                               cctgcTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGAt                                                                                                   <  2:297333/140‑1 (MQ=255)
                                ctgcTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGAtt                                                                                                  <  2:953887/140‑1 (MQ=255)
                                 tgcTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGAttt                                                                                                 <  2:20124/140‑1 (MQ=255)
                                    tCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGcc                                                                                              <  2:15346/140‑1 (MQ=255)
                                       aTGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAAt                                                                                           <  1:313180/140‑1 (MQ=255)
                                             cgcAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGTGAAGCCTGATAGGGCCCATATTGATGATCTTTACTTCGGTATTGGGATTGGCCAATAGccct                                                                                     >  2:691351/1‑139 (MQ=255)
                                             cgcAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCa                                                                                     >  1:640968/1‑140 (MQ=255)
                                             cgcAGTGCAGTTCAGTGGACACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCa                                                                                     >  2:1337995/1‑140 (MQ=255)
                                              gcagtgcagtTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCAt                                                                                    <  1:1559212/140‑1 (MQ=255)
                                              gcagtgcagtTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCAt                                                                                    <  2:1028722/140‑1 (MQ=255)
                                                agtgcagtTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCg                                                                                  <  2:1358112/140‑1 (MQ=255)
                                                agtgcagtTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCg                                                                                  <  1:861065/140‑1 (MQ=255)
                                                  tgcagtTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGc                                                                                >  2:1540612/1‑140 (MQ=255)
                                                  tgcagtTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGc                                                                                >  1:1100454/1‑140 (MQ=255)
                                                  tgcagtTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGc                                                                                >  1:806205/1‑140 (MQ=255)
                                                    cagtTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCtt                                                                              <  2:381957/140‑1 (MQ=255)
                                                      gtTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCttat                                                                            <  1:307354/140‑1 (MQ=255)
                                                       ttCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCttatt                                                                           >  2:871500/1‑140 (MQ=255)
                                                        tCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCttatta                                                                          <  1:895959/140‑1 (MQ=255)
                                                          aGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACt                                                                        <  1:1241162/140‑1 (MQ=255)
                                                            tGGGCACGTGTTATATACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      <  1:492184/140‑1 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACt                                                                        >  1:1315766/1‑138 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACt                                                                        <  2:1315766/138‑1 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      <  2:130600/140‑1 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      >  1:950277/1‑140 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      >  2:1035713/1‑140 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      <  2:1100454/140‑1 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      >  2:1170165/1‑140 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      >  2:843878/1‑140 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      >  1:510477/1‑140 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      >  2:385028/1‑140 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      >  1:558253/1‑140 (MQ=255)
                                                            tGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTa                                                                      >  1:1435510/1‑140 (MQ=255)
                                                              ggCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAAt                                                                    <  1:541499/140‑1 (MQ=255)
                                                              ggCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAAt                                                                    <  1:1545528/140‑1 (MQ=255)
                                                              ggCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAAt                                                                    <  1:1479938/140‑1 (MQ=255)
                                                                    tgtTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTta                                                              <  2:865774/140‑1 (MQ=255)
                                                                            acGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGa                                                      <  2:590382/140‑1 (MQ=255)
                                                                             cgcgCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGAt                                                     <  1:209353/140‑1 (MQ=255)
                                                                              gcgcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGAtt                                                    >  2:465658/1‑140 (MQ=255)
                                                                              gcgcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGAtt                                                    >  2:289162/1‑140 (MQ=255)
                                                                              gcgcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGAtt                                                    <  2:796412/140‑1 (MQ=255)
                                                                              gcgcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGAtt                                                    >  2:40440/1‑140 (MQ=255)
                                                                              gcgcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGAtt                                                    >  1:359646/1‑140 (MQ=255)
                                                                               cgcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTc                                                   >  2:358131/1‑140 (MQ=255)
                                                                               cgcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTc                                                   >  1:1337684/1‑140 (MQ=255)
                                                                               cgcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTc                                                   >  2:445001/1‑140 (MQ=255)
                                                                               cgcTGAAAGGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTc                                                   >  2:941876/1‑140 (MQ=255)
                                                                                gcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTcc                                                  >  1:409573/1‑140 (MQ=255)
                                                                                gcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTcc                                                  >  2:1244793/1‑140 (MQ=255)
                                                                                gcTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTcc                                                  <  2:620962/140‑1 (MQ=255)
                                                                                 cTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTccc                                                 >  1:1627131/1‑140 (MQ=255)
                                                                                   gAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCtt                                               >  1:1620253/1‑140 (MQ=255)
                                                                                    aaaTGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCttt                                              <  1:617623/140‑1 (MQ=255)
                                                                                           ggATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTatatat                                       <  1:1615652/140‑1 (MQ=255)
                                                                                              tGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATAtttt                                    <  1:1540612/140‑1 (MQ=255)
                                                                                               ggTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTc                                   >  1:677315/1‑140 (MQ=255)
                                                                                                 tttCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTg                                 <  1:1288322/140‑1 (MQ=255)
                                                                                                 tttCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTg                                 <  2:1194575/140‑1 (MQ=255)
                                                                                                      tGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTg                            >  1:1567690/1‑140 (MQ=255)
                                                                                                      tGCCTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTg                            >  1:527044/1‑140 (MQ=255)
                                                                                                        ccTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGtt                          <  1:744318/140‑1 (MQ=255)
                                                                                                         cTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTa                         <  1:1019592/140‑1 (MQ=255)
                                                                                                         cTCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTa                         <  1:858751/140‑1 (MQ=255)
                                                                                                          tCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAt                        >  1:258491/1‑140 (MQ=255)
                                                                                                          tCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAt                        >  1:586517/1‑140 (MQ=255)
                                                                                                          tCACACGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAt                        >  1:959357/1‑140 (MQ=255)
                                                                                                           cacaCGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAtt                       >  1:828913/1‑140 (MQ=255)
                                                                                                           cacaCGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTAtt                       <  1:843878/140‑1 (MQ=255)
                                                                                                            acacGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTc                      >  1:190312/1‑140 (MQ=255)
                                                                                                            acacGATAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTc                      >  2:17728/1‑140 (MQ=255)
                                                                                                                  tAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAtt                >  1:501228/1‑140 (MQ=255)
                                                                                                                  tAAAAAAGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTAtt                >  1:1091716/1‑140 (MQ=255)
                                                                                                                       aaGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCAtt           <  1:1012344/140‑1 (MQ=255)
                                                                                                                       aaGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCAtt           <  2:566859/140‑1 (MQ=255)
                                                                                                                       aaGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCAtt           <  1:1170165/140‑1 (MQ=255)
                                                                                                                       aaGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCAtt           <  2:558253/140‑1 (MQ=255)
                                                                                                                       aaGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCAtt           <  1:946253/140‑1 (MQ=255)
                                                                                                                       aaGATGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCAtt           <  1:203817/140‑1 (MQ=255)
                                                                                                                          aTGAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGc        >  1:1114439/1‑140 (MQ=255)
                                                                                                                            gAGTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCt      >  1:752642/1‑140 (MQ=255)
                                                                                                                              gTCTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTa    >  1:53142/1‑140 (MQ=255)
                                                                                                                                cTGATAGGGCTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAat  <  1:465658/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                   
AGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTTCAGTGGGCACGTGTTATACACGCGCTGAAATGAAGGATGGTTTCATGCCTCACACGATAAAAAAGATGAGTCTGATAGGACTCATATTGATGATCTTTACTTCCGTATTTGGATTTGCCAATAGCCCATCGGCTTATTACTTAATGGGTTATAGTGCGATTCCCTTTTATATATTTTCTGCATTGTTATTCTTTATTCCATTCGCCTTAAT  >  NC_000913/4383738‑4384005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A