Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
116 |
98.7 |
3298914 |
99.2% |
3272522 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,523,001 |
A→G |
V365A (GTG→GCG) |
yjhG ← |
KpLE2 phage‑like element; D‑xylonate dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,523,001 | 0 | A | G | 100.0%
| 387.7
/ NA
| 104 | V365A (GTG→GCG) | yjhG | KpLE2 phage‑like element; D‑xylonate dehydratase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (39/65); total (39/65) |
Only 100 of 110 total aligned reads displayed.
GCAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGC > NC_000913/4522864‑4523137
|
gCAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGcgca < 2:477192/140‑1 (MQ=255)
cAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCgcac < 2:374780/140‑1 (MQ=255)
gAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGcaccac < 1:659618/140‑1 (MQ=255)
aGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCaccacc < 2:69875/140‑1 (MQ=255)
cTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCa > 2:695/1‑140 (MQ=255)
cTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCa > 2:1210772/1‑140 (MQ=255)
tGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATa < 1:921072/140‑1 (MQ=255)
tGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATa < 1:99666/140‑1 (MQ=255)
tGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATa < 2:1133226/140‑1 (MQ=255)
tGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATa < 1:1417243/140‑1 (MQ=255)
tGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATa < 1:1413034/140‑1 (MQ=255)
aaCCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATaaa > 1:583056/1‑140 (MQ=255)
aaCCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATaaa > 1:685890/1‑140 (MQ=255)
aaCCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATaaa > 1:693269/1‑140 (MQ=255)
aaCCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATaaa > 1:23811/1‑140 (MQ=255)
gACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTg < 2:413633/140‑1 (MQ=255)
cGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGAc < 1:1400867/140‑1 (MQ=255)
gCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGAcc > 1:338586/1‑140 (MQ=255)
ccGTTCGGAGTGCTCCCACCGGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATACCGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCg < 2:827418/140‑1 (MQ=255)
ccGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCg < 1:1323243/140‑1 (MQ=255)
ccGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCg < 2:932933/140‑1 (MQ=255)
gtacGGAGTGCTCCCACCAGTCGAGTTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGtt < 1:1604384/137‑1 (MQ=255)
gTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGtt < 1:1488583/140‑1 (MQ=255)
gTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGtt < 2:1545978/140‑1 (MQ=255)
gTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGtt < 2:270595/140‑1 (MQ=255)
gAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGgatg < 1:1241021/140‑1 (MQ=255)
aGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGgatga < 1:889302/140‑1 (MQ=255)
tCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAAc < 1:388775/140‑1 (MQ=255)
cccACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCCCCTGCCAT‑AAGGCATTGACCGTTGGATGATAAACCg < 1:379867/140‑1 (MQ=255)
ccaccaGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCg < 2:1256584/140‑1 (MQ=255)
ccaccaGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCg < 1:1075582/140‑1 (MQ=255)
ccaccaGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCg < 1:103369/140‑1 (MQ=255)
ccaccaGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCg < 1:1184332/140‑1 (MQ=255)
accaGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCggg < 2:801583/140‑1 (MQ=255)
accaGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCggg < 2:703805/140‑1 (MQ=255)
ccaGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGc > 2:1599589/1‑140 (MQ=255)
ccaGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGc > 1:1608834/1‑140 (MQ=255)
caGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGcc < 2:523648/140‑1 (MQ=255)
tCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCAtt > 2:729558/1‑140 (MQ=255)
tCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCAtt > 2:1629537/1‑140 (MQ=255)
gAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAg < 1:739399/140‑1 (MQ=255)
aGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAgg < 1:1188747/140‑1 (MQ=255)
ggTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGc < 2:1191827/140‑1 (MQ=255)
gTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCa < 1:531119/140‑1 (MQ=255)
gTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCa < 1:1340668/140‑1 (MQ=255)
gTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCa > 2:24996/1‑140 (MQ=255)
gTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCa < 2:1426371/140‑1 (MQ=255)
tttctttcAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGt < 1:477499/140‑1 (MQ=255)
ctttcAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACg < 1:1386841/140‑1 (MQ=255)
gCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCAcc > 2:778212/1‑140 (MQ=255)
ctgcCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCg > 2:470964/1‑140 (MQ=255)
ccGGTAACGGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCgggg < 2:228616/140‑1 (MQ=255)
ccGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCgggg < 2:1196282/140‑1 (MQ=255)
ggTACCCGTCATAACGTCTTCAGGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCa < 2:630937/140‑1 (MQ=255)
ggTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCa < 2:338586/140‑1 (MQ=255)
tAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCAcg < 1:1153755/140‑1 (MQ=255)
ccGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCCCCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACgcgc < 2:368641/140‑1 (MQ=255)
cATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCttgt > 1:920588/1‑140 (MQ=255)
cATAACGGCTTCATGCAGC‑ATCCGAGGCGGCGCAGAGGCAACATGCCTTCCGGCGCGCCCCCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCttgtt < 2:1174158/140‑1 (MQ=255)
tAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCttgttg > 2:286048/1‑140 (MQ=255)
aaCGTCTTCATGCAACAAACCGAGGGTGCGCAGATGCAACATGGCTTCCGGCGCCCCCCCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGa < 2:1330689/140‑1 (MQ=255)
cGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATg < 2:1638246/140‑1 (MQ=255)
cGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATg < 1:1412402/140‑1 (MQ=255)
cGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATg < 2:831935/140‑1 (MQ=255)
tCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCg > 1:691844/1‑140 (MQ=255)
ttCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGa > 1:580844/1‑140 (MQ=255)
ttCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGa > 1:368728/1‑140 (MQ=255)
cATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATc > 1:820146/1‑140 (MQ=255)
cATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATc > 2:733060/1‑140 (MQ=255)
gCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAg > 1:413703/1‑140 (MQ=255)
acaaTCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGtca > 2:1184865/1‑140 (MQ=255)
acaaTCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGtca > 2:659615/1‑140 (MQ=255)
caaTCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGtcat > 2:747150/1‑140 (MQ=255)
caaTCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGtcat > 2:309222/1‑140 (MQ=255)
aaTCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGtcatc < 1:1210772/140‑1 (MQ=255)
aTCGGAGGCGGCGCAGATGCAACATGACTTCCGGCGCACCCCCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGtcatcg < 2:23811/140‑2 (MQ=255)
aTCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGtcatca < 1:73869/140‑1 (MQ=255)
aTCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATAAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGtcatca > 2:1425676/1‑140 (MQ=255)
tCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCaa < 1:475325/140‑1 (MQ=255)
tCCGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCaa > 2:1622851/1‑140 (MQ=255)
ccGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAAc > 2:740179/1‑140 (MQ=255)
cGAGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACg > 2:1078519/1‑140 (MQ=255)
aGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGt < 1:1599589/140‑1 (MQ=255)
aGGCTGCGCAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGt < 2:1608834/140‑1 (MQ=255)
aGGCTGCGCAGATGCAACATGACTGCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGt < 2:583056/140‑1 (MQ=255)
tgcAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGat > 1:456195/2‑140 (MQ=255)
cgcAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGat > 1:916658/1‑140 (MQ=255)
cgcAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGat > 1:1110172/1‑140 (MQ=255)
cgcAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGat > 2:15364/1‑140 (MQ=255)
cgcAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGat > 1:808569/1‑140 (MQ=255)
cgcAGATGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGat > 1:1098016/1‑140 (MQ=255)
aTGCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGc < 1:621605/140‑1 (MQ=255)
gCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCaa < 1:733060/140‑1 (MQ=255)
gCAACATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCaa < 1:286048/140‑1 (MQ=255)
aCATGACTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAAcct < 1:309222/140‑1 (MQ=255)
ccTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAAcctgcctg < 2:693269/139‑1 (MQ=255)
aCTTCCGGCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAAcctgcctg > 1:180735/1‑140 (MQ=255)
ggCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGc < 2:267441/140‑1 (MQ=255)
ggCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGc < 2:1110172/140‑1 (MQ=255)
ggCGCACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGc < 2:916658/140‑1 (MQ=255)
|
GCAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGC > NC_000913/4522864‑4523137
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
