Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 120 56.0 1898522 99.4% 1887130 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,430,909 C→T T349M (ACG→ATG)  cycA → serine/alanine/glycine/cycloserine:H(+)symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,430,9090CT100.0% 243.1 / NA 68T349M (ACG→ATG) cycAserine/alanine/glycine/cycloserine:H(+)symporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (37/31);  total (37/31)

CTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGACGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCTTTGCTCGT  >  NC_000913/4430773‑4431043
                                                                                                                                        |                                                                                                                                      
cTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGGAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGtt                                                                                                                                     >  1:218836/1‑140 (MQ=255)
cTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGtt                                                                                                                                     >  2:491877/1‑140 (MQ=255)
cTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGtt                                                                                                                                     >  2:389419/1‑140 (MQ=255)
   aCCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTtctc                                                                                                                                  >  2:495120/1‑140 (MQ=255)
        tGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTa                                                                                                                             >  1:309831/1‑140 (MQ=255)
        tGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTa                                                                                                                             >  1:762704/1‑140 (MQ=255)
          cggcgTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTAtc                                                                                                                           >  2:9797/1‑140 (MQ=255)
             cgTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTAtctgt                                                                                                                        >  2:443135/1‑140 (MQ=255)
             cgTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTAtctgt                                                                                                                        >  2:463446/1‑140 (MQ=255)
                    cGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTcg                                                                                                                 <  2:762704/140‑1 (MQ=255)
                     gCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTcgg                                                                                                                <  2:852351/140‑1 (MQ=255)
                          cAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGgcggcg                                                                                                           <  2:309831/140‑1 (MQ=255)
                          cAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGgcggcg                                                                                                           <  2:699766/140‑1 (MQ=255)
                          cAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGgcggcg                                                                                                           <  2:238517/140‑1 (MQ=255)
                             cggcgTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCgtgg                                                                                                        >  1:741942/1‑140 (MQ=255)
                             cggcgTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCgtgg                                                                                                        >  1:900406/1‑140 (MQ=255)
                              ggcgTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCgtggt                                                                                                       <  1:443135/140‑1 (MQ=255)
                              ggcgTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCgtggt                                                                                                       <  2:900406/140‑1 (MQ=255)
                                cgTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGa                                                                                                     <  2:636830/140‑1 (MQ=255)
                                cgTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGa                                                                                                     <  1:896765/140‑1 (MQ=255)
                                          aCCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTAtgt                                                                                           <  1:42625/140‑1 (MQ=255)
                                          aCCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTAtgt                                                                                           <  1:235069/140‑1 (MQ=255)
                                          aCCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTAtgt                                                                                           <  2:9502/140‑1 (MQ=255)
                                             aGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGaa                                                                                        <  1:865046/140‑1 (MQ=255)
                                             aGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGaa                                                                                        <  1:9797/140‑1 (MQ=255)
                                              gCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCgtggt                                                                                                       >  1:495131/1‑124 (MQ=255)
                                              gCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCgtggt                                                                                                       <  2:495131/124‑1 (MQ=255)
                                              gCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAAt                                                                                       >  1:251752/1‑140 (MQ=255)
                                              gCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAAt                                                                                       >  1:933856/1‑140 (MQ=255)
                                                   aTGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAg                                                                                  >  2:424539/1‑140 (MQ=255)
                                                   aTGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAg                                                                                  >  1:938800/1‑140 (MQ=255)
                                                         tttGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGAt                                                                            >  2:183226/1‑140 (MQ=255)
                                                             gTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGgc                                                                        >  2:123426/1‑140 (MQ=255)
                                                              tCTGGCGCAGGAAGGTGCGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGgcg                                                                       >  1:946171/1‑140 (MQ=255)
                                                                tGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAAt                                                                                       >  1:276323/1‑122 (MQ=255)
                                                                tGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAAt                                                                                       <  2:276323/122‑1 (MQ=255)
                                                                   cgcAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTTTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTc                                                                  >  2:208686/1‑140 (MQ=255)
                                                                             tgtgGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATGCTAGTGTGATTGGCGAGTTCACGATGAGTa                                                        >  2:583156/1‑140 (MQ=255)
                                                                             tgtgGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTa                                                        >  1:335800/1‑140 (MQ=255)
                                                                                      gAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGttt                                               >  1:101500/1‑140 (MQ=255)
                                                                                       aaaGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTc                                              >  2:628380/1‑140 (MQ=255)
                                                                                         aGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCcg                                            <  2:678377/140‑1 (MQ=255)
                                                                                            gTTCGCTAAACTTTCTAAGCGCGCAGTGCCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGa                                         <  2:850904/140‑1 (MQ=255)
                                                                                             ttCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGAt                                        <  1:424539/140‑1 (MQ=255)
                                                                                              tCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGAtt                                       <  2:251752/140‑1 (MQ=255)
                                                                                              tCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGAtt                                       >  1:625242/1‑140 (MQ=255)
                                                                                              tCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGAtt                                       >  1:34829/1‑140 (MQ=255)
                                                                                               cGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTc                                      <  2:311706/140‑1 (MQ=255)
                                                                                                        ttCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGt                             <  2:335800/140‑1 (MQ=255)
                                                                                                         tCTAAGCGCGCAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGtt                            >  1:424627/1‑140 (MQ=255)
                                                                                                               cgcgcAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTg                      <  2:741942/140‑1 (MQ=255)
                                                                                                               cgcgcAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTg                      <  1:498398/140‑1 (MQ=255)
                                                                                                                gcgcAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTgg                     <  1:583156/140‑1 (MQ=255)
                                                                                                                 cgcAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGa                    <  1:389419/140‑1 (MQ=255)
                                                                                                                 cgcAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGa                    <  2:34829/140‑1 (MQ=255)
                                                                                                                 cgcAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGa                    >  1:311042/1‑140 (MQ=255)
                                                                                                                 cgcAGTACCCGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGa                    <  2:311042/140‑1 (MQ=255)
                                                                                                                         ccGCGAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATc            >  1:591627/1‑140 (MQ=255)
                                                                                                                           gcgAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCt          <  2:591627/140‑1 (MQ=255)
                                                                                                                           gcgAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCt          <  2:938800/140‑1 (MQ=255)
                                                                                                                            cgAAAGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCtt         >  2:924591/1‑140 (MQ=255)
                                                                                                                              aaaGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGAGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCTTTg       >  2:685590/1‑140 (MQ=255)
                                                                                                                                aGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCTTTGCt     >  2:174750/1‑140 (MQ=255)
                                                                                                                                aGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCTTTGCt     >  1:128543/1‑140 (MQ=255)
                                                                                                                                aGGGCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCTTTGCt     >  1:855815/1‑140 (MQ=255)
                                                                                                                                aGGGCTGATGCTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGCCTGGACGATTATCCTTTGCt     >  2:329479/1‑140 (MQ=255)
                                                                                                                                  ggCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCTTTGCTCg   >  1:117585/1‑140 (MQ=255)
                                                                                                                                   gCTGATGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCTTTGCTCGt  <  1:183226/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
CTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTGGCACCGAAAGCGTTCGCTAAACTTTCTAAGCGCGCAGTACCCGCGAAAGGGCTGACGTTCTCGTGTATCTGTCTGCTCGGCGGCGTGGTGATGTTGTATGTGAATCCTAGTGTGATTGGCGCGTTCACGATGATTACAACCGTTTCCGCGATTCTGTTTATGTTCGTCTGGACGATTATCCTTTGCTCGT  >  NC_000913/4430773‑4431043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A