Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 106 90.3 3060316 99.2% 3035833 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,565,915 A→G intergenic (‑65/+51) yjiM ← / ← yjiN putative dehydratase subunit/DUF445 domain‑containing protein YjiN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,565,9150AG100.0% 256.9 / NA 68intergenic (‑65/+51)yjiM/yjiNputative dehydratase subunit/DUF445 domain‑containing protein YjiN
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (42/26);  total (42/26)

GGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAGCGTA  >  NC_000913/4565779‑4566047
                                                                                                                                        |                                                                                                                                    
ggTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTgg                                                                                                                                   <  1:447263/140‑1 (MQ=255)
ggTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTgg                                                                                                                                   <  1:178339/140‑1 (MQ=255)
 gTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGGAGATCGGGGACAAGGGACATGATTTTTCTTCCCCGTACCACGGGAGAGAAAGAAAAGAGGCCACATTATTACCATTCTTTTTGTGTggg                                                                                                                                  >  2:1280569/1‑139 (MQ=255)
  tGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGtt                                                                                                                                 >  1:1446548/1‑140 (MQ=255)
                tGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGAtctctct                                                                                                                   <  2:1526028/140‑1 (MQ=255)
                      gCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGt                                                                                                             <  2:1056767/140‑1 (MQ=255)
                       cTTCAGAGAACTGATCGAAAATGGCGGGGAGATCGGGGGCAAAGGACATGATTTTCCTTCCCCCTACCACGGGAGAGAATGAAAAAAGGGCACATTATTACCATTCTTTTTGTGTGGTTTTTTTGATCTCTCTCGCGGtt                                                                                                            >  2:1072573/1‑140 (MQ=255)
                        ttCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTa                                                                                                           <  1:451508/140‑1 (MQ=255)
                                aCTGATCGAAAATGGCGTGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTa                                                                                                   >  2:1385008/1‑140 (MQ=255)
                                 cTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAg                                                                                                  <  1:500612/140‑1 (MQ=255)
                                    aTCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTTCTTCCCCGTACCACGGGGGATAATGAAAAAAGGCCACCTTATTTCCATTCTTTTTGTGTGGGTTATTTTATCTCTCTCGCGGGTAGCCACTTTGttt                                                                                               >  2:1445127/1‑140 (MQ=255)
                                    aTCGAAAATGGCGGGTAGATCGGGGACAAGTGACATGATTTTTCTTCCCCCTACCACGGGGGATAATGAAAAGAGGGCACATTATTATCATTCTTTTAGTTTGGGTTTTTTTATATCTCTCCCCGGTAGCCACTTAGttt                                                                                               >  2:1453782/1‑140 (MQ=255)
                                    aTCGAAAATGGCGGGGAGATCGGGGACAAGTGACATGATTTTCCCTCCCCGTACCACGGGAGAAAATGAAAAAAGGCCACATTATTACCCTTCTTTTTATGTGGGTTTTTTTATCTCTCTCCCGGGTTGCCACTTTGttt                                                                                               >  2:1035161/1‑140 (MQ=255)
                                    aTCGAAAATGGCGGGGAGATCGGGGACAAGGGGCATGATTTTTCTTCCCCCTACCACGGGGGGGAAAGAAAAAAGGCCACATTATTACCATTCTTTTAGTGTGGGTTTTTTGATCTCTCTCGCGGTTAGCCACTTAGttt                                                                                               >  2:1080800/1‑140 (MQ=255)
                                    aTCGAAAATGGCGGGGAGATCGGGGACAAGGGACATGATTTTTCTTCCCCCTACCACGGGAGATAATGAAAAGAGGGCACATTATTACCATTCTTTTTGTGTGGGTTTTTTGATCTCTCTCGCGGGTAGCCACTTAGgtt                                                                                               >  2:1169327/1‑140 (MQ=255)
                                    aTCGAAAATGGCAGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGttt                                                                                               >  1:817922/1‑140 (MQ=255)
                                        aaaaTGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCa                                                                                           <  2:1446548/140‑1 (MQ=255)
                                                           tGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTGCCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGcc                                                                        <  2:671654/140‑1 (MQ=255)
                                                           tGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGcc                                                                        >  1:1144785/1‑140 (MQ=255)
                                                           tGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGcc                                                                        >  2:645695/1‑140 (MQ=255)
                                                            gACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAAATGCCg                                                                       <  1:1280569/140‑1 (MQ=255)
                                                             aCAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGa                                                                      <  1:628119/140‑1 (MQ=255)
                                                             aCAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGa                                                                      <  2:1319469/140‑1 (MQ=255)
                                                               aaGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAgg                                                                    <  2:1512165/140‑1 (MQ=255)
                                                               aaGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAgg                                                                    <  2:89572/140‑1 (MQ=255)
                                                               aaGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAgg                                                                    >  2:841697/1‑140 (MQ=255)
                                                               aaGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAgg                                                                    <  1:1411850/140‑1 (MQ=255)
                                                                aGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGACATTTAGTTTTTCATGGATTTCTAAAAATTGCCGAggg                                                                   >  2:100369/1‑140 (MQ=255)
                                                                 gTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAgggg                                                                  >  2:1024149/1‑140 (MQ=255)
                                                                 gTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAgggg                                                                  >  1:603152/1‑140 (MQ=255)
                                                                 gTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAgggg                                                                  >  1:29819/1‑140 (MQ=255)
                                                                      aTGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACa                                                             <  2:1088762/140‑1 (MQ=255)
                                                                           tttCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGcc                                                        <  1:1191357/140‑1 (MQ=255)
                                                                            ttccttccCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCg                                                       >  1:143683/1‑140 (MQ=255)
                                                                                   cccGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTg                                                >  2:986780/1‑140 (MQ=255)
                                                                                   cccGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTg                                                >  1:323867/1‑140 (MQ=255)
                                                                                   cccGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTg                                                >  1:557539/1‑140 (MQ=255)
                                                                                     cGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCg                                              >  1:795518/1‑140 (MQ=255)
                                                                                     cGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCg                                              >  2:181708/1‑140 (MQ=255)
                                                                                      gTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGa                                             <  2:318978/140‑1 (MQ=255)
                                                                                      gTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGa                                             <  2:318977/140‑1 (MQ=255)
                                                                                        aCCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACa                                           >  1:1319153/1‑140 (MQ=255)
                                                                                        aCCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACa                                           >  1:1387978/1‑140 (MQ=255)
                                                                                           aCGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCa                                        <  1:1445127/140‑1 (MQ=255)
                                                                                           aCGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCa                                        <  1:1453782/140‑1 (MQ=255)
                                                                                           aCGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCa                                        <  2:972234/140‑1 (MQ=255)
                                                                                            cGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCaa                                       >  1:411106/1‑140 (MQ=255)
                                                                                            cGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGA‑‑TCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAat                                     >  1:261228/1‑140 (MQ=255)
                                                                                            cGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTGGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCaa                                       >  2:1120156/1‑140 (MQ=255)
                                                                                             gggAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCaaa                                      >  1:300817/1‑140 (MQ=255)
                                                                                              ggAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAat                                     >  1:1489916/1‑140 (MQ=255)
                                                                                                 gaTAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAAtata                                  >  2:134052/1‑140 (MQ=255)
                                                                                                  aTAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATaa                                 >  1:777691/1‑140 (MQ=255)
                                                                                                     aTGAAAAGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAAt                              <  1:1385008/140‑1 (MQ=255)
                                                                                                         aaaGAGGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGc                          >  1:243330/1‑140 (MQ=255)
                                                                                                           agagGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGccc                        >  1:600552/1‑140 (MQ=255)
                                                                                                           agagGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGccc                        >  1:1302587/1‑140 (MQ=255)
                                                                                                            gagGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCa                       >  1:324341/1‑140 (MQ=255)
                                                                                                             agGCCACATTATTATCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCaa                      >  1:482565/1‑140 (MQ=255)
                                                                                                             agGCCACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCaa                      >  2:1107614/1‑140 (MQ=255)
                                                                                                               gCCACATTATTACCGTTCATTGCGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCACGGTTTTCTAAAAATTGCCGAGGGGGAAAAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCtata                    >  2:1216654/1‑140 (MQ=255)
                                                                                                                ccACATTATTACCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATAc                   <  2:1061417/140‑1 (MQ=255)
                                                                                                                       attaCCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGcc            >  2:781866/1‑140 (MQ=255)
                                                                                                                         taCCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCaa          <  1:337335/140‑1 (MQ=255)
                                                                                                                          aCCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAAc         <  1:181708/140‑1 (MQ=255)
                                                                                                                          aCCATTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAAc         <  2:777691/140‑1 (MQ=255)
                                                                                                                             aTTCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAg      >  2:1029493/1‑140 (MQ=255)
                                                                                                                              ttCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAGc     >  1:707238/1‑140 (MQ=255)
                                                                                                                              ttCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAGc     >  2:627494/1‑140 (MQ=255)
                                                                                                                              ttCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAGc     >  2:12243/1‑140 (MQ=255)
                                                                                                                              ttCTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAGc     >  1:711220/1‑140 (MQ=255)
                                                                                                                                cTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAGCGt   >  2:69259/1‑140 (MQ=255)
                                                                                                                                cTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAGCGt   >  1:707386/1‑140 (MQ=255)
                                                                                                                                cTTTTAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAGCGt   >  1:48336/1‑140 (MQ=255)
                                                                                                                                 ttttAGTGTGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAGCGTa  >  1:1323639/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                    
GGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCGTACCACGGGAGATAATGAAAAGAGGCCACATTATTACCATTCTTTTAGTATGGTTTATTTGATCTCTCTCGCGGTTAGCCACTTAGTTTTTCATGGATTTCTAAAAATTGCCGAGGGGGAACAAGGCCGGGAGCTGCGACAGCAAATATAAAATTAGCCCAATACAACCGCCAACCAGCGTA  >  NC_000913/4565779‑4566047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A