Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 108 95.2 3177646 99.2% 3152224 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,475,152 T→C D97D (GAT→GAC)  tabA → DUF386 domain‑containing toxin‑antitoxin biofilm protein TabA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,475,1520TC100.0% 332.0 / NA 87D97D (GAT→GAC) tabADUF386 domain‑containing toxin‑antitoxin biofilm protein TabA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (48/39);  total (48/39)

ATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGATAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCGCAAAG  >  NC_000913/4475015‑4475288
                                                                                                                                         |                                                                                                                                        
atGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACaa                                                                                                                                        >  1:633793/1‑140 (MQ=255)
  gACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAg                                                                                                                                      <  1:1048365/140‑1 (MQ=255)
       aGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATc                                                                                                                                 >  1:106083/1‑140 (MQ=255)
       aGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATc                                                                                                                                 >  1:144537/1‑140 (MQ=255)
       aGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCATGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATc                                                                                                                                 >  1:3737/1‑140 (MQ=255)
        gCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCg                                                                                                                                >  2:24018/1‑140 (MQ=255)
         ccGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGc                                                                                                                               >  1:444630/1‑140 (MQ=255)
                aaGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTg                                                                                                                        <  2:969335/140‑1 (MQ=255)
                  gCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGcc                                                                                                                      >  1:296503/1‑140 (MQ=255)
                   cTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCg                                                                                                                     >  1:377975/1‑140 (MQ=255)
                      gCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCTGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGaa                                                                                                                  >  2:1161199/1‑140 (MQ=255)
                       ccGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAg                                                                                                                 <  1:1191530/140‑1 (MQ=255)
                          tGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCg                                                                                                              <  1:1042691/140‑1 (MQ=255)
                                gTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTtgatg                                                                                                        <  1:983167/140‑1 (MQ=255)
                                  aCCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACC‑TCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATgaga                                                                                                     >  1:442231/1‑140 (MQ=255)
                                    cATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGaa                                                                                                    <  2:1432997/140‑1 (MQ=255)
                                      tGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGaaaa                                                                                                  >  2:1496925/1‑140 (MQ=255)
                                      tGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGaaaa                                                                                                  >  1:893073/1‑140 (MQ=255)
                                         ccGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAg                                                                                               >  1:1488950/1‑140 (MQ=255)
                                         ccGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAg                                                                                               <  1:1236269/140‑1 (MQ=255)
                                          cGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGt                                                                                              <  1:795965/140‑1 (MQ=255)
                                          cGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGt                                                                                              <  2:1064350/140‑1 (MQ=255)
                                          cGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCATTGATGAGAAAACAGt                                                                                              <  1:1579101/140‑1 (MQ=255)
                                           gCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGtt                                                                                             >  1:140581/1‑140 (MQ=255)
                                           gCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGtt                                                                                             >  2:567890/1‑140 (MQ=255)
                                           gCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGtt                                                                                             >  1:179869/1‑140 (MQ=255)
                                              aTCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTAtt                                                                                          >  1:1256939/1‑140 (MQ=255)
                                                     cATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATg                                                                                   <  2:106083/140‑1 (MQ=255)
                                                       ttCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGaa                                                                                 >  1:721820/1‑140 (MQ=255)
                                                       ttCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGaa                                                                                 >  2:1588032/1‑140 (MQ=255)
                                                       ttCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGaa                                                                                 >  2:1445451/1‑140 (MQ=255)
                                                         cAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAgg                                                                               >  1:307882/1‑140 (MQ=255)
                                                         cAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAgg                                                                               >  1:949328/1‑140 (MQ=255)
                                                         cAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAgg                                                                               <  1:895974/140‑1 (MQ=255)
                                                         cAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAgg                                                                               >  2:971063/1‑140 (MQ=255)
                                                           gATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTg                                                                             >  1:638475/1‑140 (MQ=255)
                                                              tgtgTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCGGACAAAGGCATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGAtt                                                                          <  2:377615/140‑1 (MQ=255)
                                                                tgtTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGAtttt                                                                        >  1:636966/1‑140 (MQ=255)
                                                                  ttAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTttgt                                                                      <  1:24018/140‑1 (MQ=255)
                                                                      aaGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTttgttgag                                                                  >  1:231547/1‑138 (MQ=255)
                                                                          tCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGtttt                                                              >  2:1434652/1‑140 (MQ=255)
                                                                          tCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGtttt                                                              >  2:527236/1‑140 (MQ=255)
                                                                          tCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGtttt                                                              >  1:778355/1‑140 (MQ=255)
                                                                          tCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGtttt                                                              >  1:1089415/1‑140 (MQ=255)
                                                                          tCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGtttt                                                              >  1:1178281/1‑140 (MQ=255)
                                                                          tCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCACCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGtttt                                                              >  2:126657/1‑140 (MQ=255)
                                                                            aGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTAt                                                            >  1:1156958/1‑140 (MQ=255)
                                                                               aaGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCg                                                         <  2:296503/140‑1 (MQ=255)
                                                                                  gCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCgggg                                                      <  2:128247/140‑1 (MQ=255)
                                                                                   cATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCggggg                                                     >  1:473351/1‑140 (MQ=255)
                                                                                   cATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCggggg                                                     <  2:1074184/140‑1 (MQ=255)
                                                                                     tGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGaa                                                   <  1:1331970/140‑1 (MQ=255)
                                                                                       aCCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGt                                                 <  1:808556/140‑1 (MQ=255)
                                                                                       aCCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGt                                                 <  2:3737/140‑1 (MQ=255)
                                                                                       aCCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGGGATTTTGTTGTGTTTTATCCGGAGGAAgg                                                 >  2:520666/1‑139 (MQ=255)
                                                                                         cTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGc                                               >  1:865453/1‑140 (MQ=255)
                                                                                         cTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGc                                               <  1:340163/140‑1 (MQ=255)
                                                                                         cTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGc                                               <  1:1496925/140‑1 (MQ=255)
                                                                                            cAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATa                                            >  2:148262/1‑140 (MQ=255)
                                                                                            cAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATa                                            >  2:977103/1‑140 (MQ=255)
                                                                                              gCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATaaa                                          <  1:971063/140‑1 (MQ=255)
                                                                                                 cGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCg                                       <  2:624015/140‑1 (MQ=255)
                                                                                                 cGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCg                                       >  1:758374/1‑140 (MQ=255)
                                                                                                      ccTGCAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCtgtg                                  >  1:414936/1‑140 (MQ=255)
                                                                                                          cAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCa                              <  2:1488950/140‑1 (MQ=255)
                                                                                                          cAGGCGCGCCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCa                              >  1:1491142/1‑140 (MQ=255)
                                                                                                                cgcCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGgc                        >  1:1438383/1‑140 (MQ=255)
                                                                                                                cgcCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGgc                        >  2:80367/1‑140 (MQ=255)
                                                                                                                cgcCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGgc                        >  1:259907/1‑140 (MQ=255)
                                                                                                                cgcCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGgc                        >  1:183342/1‑140 (MQ=255)
                                                                                                                cgcCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGgc                        >  1:1256559/1‑140 (MQ=255)
                                                                                                                cgcCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGgc                        >  1:1573161/1‑140 (MQ=255)
                                                                                                                cgcCGGATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGAGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGgc                        >  2:941199/1‑140 (MQ=255)
                                                                                                                    ggATACCGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGgcgcgc                    <  2:140581/140‑1 (MQ=255)
                                                                                                                          cGACTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGccc              <  2:778355/140‑1 (MQ=255)
                                                                                                                            aCTGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAg            <  1:307794/140‑1 (MQ=255)
                                                                                                                              tGGTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGt          <  1:1445451/140‑1 (MQ=255)
                                                                                                                               ggTTAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGtt         <  2:1581888/140‑1 (MQ=255)
                                                                                                                                 ttAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCg       <  2:444630/140‑1 (MQ=255)
                                                                                                                                 ttAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCg       <  2:633793/140‑1 (MQ=255)
                                                                                                                                 ttAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCg       <  2:144537/140‑1 (MQ=255)
                                                                                                                                 ttAGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCg       <  1:899285/140‑1 (MQ=255)
                                                                                                                                   aGCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCGCa     <  2:377975/140‑1 (MQ=255)
                                                                                                                                    gCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCGCaa    <  2:307882/140‑1 (MQ=255)
                                                                                                                                    gCTGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCGCaa    <  1:148262/140‑1 (MQ=255)
                                                                                                                                      tGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCGCAAAg  <  1:126657/140‑1 (MQ=255)
                                                                                                                                      tGACAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCGCAAAg  <  1:520666/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
ATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATTCAGATTGTGTTAAAAGGTCAGGAAGGCATGACCTTCAGCACGCAACCTGCAGGCGCGCCGGATACCGACTGGTTAGCTGATAAAGACATCGCATTTTTGCCGGAAGGCGTTGATGAGAAAACAGTTATTCTAAATGAAGGTGATTTTGTTGTGTTTTATCCGGGGGAAGTGCATAAACCGCTGTGCGCAGTGGGCGCGCCAGCCCAGGTTCGCAAAG  >  NC_000913/4475015‑4475288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A