Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	108	95.2	3177646	99.2%	3152224	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,535,811	Δ1 bp	pseudogene (797/1017 nt)	yjhR →	KpLE2 phage‑like element; PLD‑like domain‑containing protein YjhR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,535,808	0	A	.	100.0%	548.0 / NA	122	pseudogene (794/1017 nt)	yjhR	KpLE2 phage‑like element; PLD‑like domain‑containing protein YjhR
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (67/55); total (67/55)

Only 100 of 126 total aligned reads displayed.

GGATTTCTGGCATCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTGAAAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTATCAAC  >  NC_000913/4535672‑4535942

ggATTTCTGGCATCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTGaaag                                                                                                                                     <  2:1187808/140‑2 (MQ=255)

ggATTTCTGGCATCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTGaaag                                                                                                                                     <  2:490384/140‑2 (MQ=255)

ggATTTCTGGCATCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTGaaag                                                                                                                                     <  2:708460/140‑2 (MQ=255)

    ttCTGGCATCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCa                                                                                                                                <  1:1319053/140‑1 (MQ=255)

      cTGGCATCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAAt                                                                                                                              <  1:155532/140‑1 (MQ=255)

      cTGGCATCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAAt                                                                                                                              <  1:171027/140‑1 (MQ=255)

       tGGCATCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATa                                                                                                                             >  1:720469/1‑140 (MQ=255)

          cATCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGa                                                                                                                          <  2:708338/140‑1 (MQ=255)

           aTCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGAt                                                                                                                         <  1:1208439/140‑1 (MQ=255)

           aTCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGAt                                                                                                                         <  1:834107/140‑1 (MQ=255)

              aaTGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATggg                                                                                                                      >  2:512213/1‑140 (MQ=255)

                 ggCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTAt                                                                                                                   <  2:410702/140‑1 (MQ=255)

                      tGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTa                                                                                                              >  2:535996/1‑140 (MQ=255)

                        gCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACg                                                                                                            >  2:842769/1‑140 (MQ=255)

                             ttCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAAtt                                                                                                       >  1:201235/1‑140 (MQ=255)

                             ttCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAAtt                                                                                                       >  2:1204151/1‑140 (MQ=255)

                             ttCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAAtt                                                                                                       >  2:580094/1‑140 (MQ=255)

                             ttCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAAtt                                                                                                       >  1:400200/1‑140 (MQ=255)

                             ttCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAAtt                                                                                                       <  1:1392473/140‑1 (MQ=255)

                                ccGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGt                                                                                                    <  2:858145/140‑1 (MQ=255)

                                ccGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGt                                                                                                    <  2:499185/140‑1 (MQ=255)

                                  ggggCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTa                                                                                                  <  2:316123/140‑1 (MQ=255)

                                       aTTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCgt                                                                                             >  1:112731/1‑140 (MQ=255)

                                       aTTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCgt                                                                                             >  1:14725/1‑140 (MQ=255)

                                       aTTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCgg                                                                                             >  2:1082321/1‑139 (MQ=255)

                                        ttGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCgtg                                                                                            >  1:61454/1‑140 (MQ=255)

                                        ttGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCgtg                                                                                            >  1:1119699/1‑140 (MQ=255)

                                         tGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCgtgt                                                                                           >  2:314051/1‑140 (MQ=255)

                                          gATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGtt                                                                                          <  2:1110617/140‑1 (MQ=255)

                                               tACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAg                                                                                     <  2:80720/140‑1 (MQ=255)

                                               tACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAg                                                                                     <  2:481307/140‑1 (MQ=255)

                                                aCCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGc                                                                                    >  1:1538316/1‑140 (MQ=255)

                                                 ccGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCa                                                                                   >  2:614754/1‑140 (MQ=255)

                                                  cGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCaa                                                                                  >  2:652376/1‑140 (MQ=255)

                                                    tggtgACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCaaaa                                                                                >  1:1405650/1‑140 (MQ=255)

                                                     ggtgACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAAt                                                                               >  2:600102/1‑140 (MQ=255)

                                                      gtgACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTGATCGTGTTCACAGCAAAAtt                                                                              >  1:756305/1‑140 (MQ=255)

                                                      gtgACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAAtt                                                                              >  2:1347475/1‑140 (MQ=255)

                                                      gtgACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAAtt                                                                              >  2:1581260/1‑140 (MQ=255)

                                                      gtgACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAAtt                                                                              >  1:1499468/1‑140 (MQ=255)

                                                         aCGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATtgtg                                                                           >  2:12416/1‑140 (MQ=255)

                                                         aCGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATtgtg                                                                           >  2:1264894/1‑140 (MQ=255)

                                                         aCGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATtgtg                                                                           >  2:783031/1‑140 (MQ=255)

                                                          cGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGa                                                                          >  1:1221637/1‑140 (MQ=255)

                                                           ggATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGAt                                                                         <  1:687928/140‑1 (MQ=255)

                                                           ggATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGAt                                                                         <  2:1478338/140‑1 (MQ=255)

                                                                aaaaCTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAgg                                                                    <  1:469726/140‑1 (MQ=255)

                                                                   aCTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATg                                                                 <  1:1362818/140‑1 (MQ=255)

                                                                   aCTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATg                                                                 <  2:112731/140‑1 (MQ=255)

                                                                   aCTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATg                                                                 <  2:1133851/140‑1 (MQ=255)

                                                                     tGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATgaa                                                               >  1:642561/1‑140 (MQ=255)

                                                                       cAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATgaaga                                                             >  2:615988/1‑140 (MQ=255)

                                                                        aaTATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATgaagaa                                                            <  2:931479/140‑1 (MQ=255)

                                                                        aaTATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATgaagaa                                                            <  1:456049/140‑1 (MQ=255)

                                                                           ataGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAActg                                                         <  2:164561/140‑1 (MQ=255)

                                                                              gcgcATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAActgctg                                                      <  2:14725/140‑1 (MQ=255)

                                                                                 cATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCtgtgt                                                   >  2:815369/1‑140 (MQ=255)

                                                                                    gTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTc                                                >  1:686909/1‑140 (MQ=255)

                                                                                    gTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTc                                                >  1:528676/1‑140 (MQ=255)

                                                                                    gTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTc                                                >  2:151546/1‑140 (MQ=255)

                                                                                    gTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTc                                                >  2:791200/1‑140 (MQ=255)

                                                                                     tCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCg                                               <  1:512213/140‑1 (MQ=255)

                                                                                     tCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCg                                               <  2:769576/140‑1 (MQ=255)

                                                                                      cGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCgg                                              <  1:1504062/140‑1 (MQ=255)

                                                                                      cGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCgg                                              <  2:568927/140‑1 (MQ=255)

                                                                                              atAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTa                                      >  2:1488090/1‑140 (MQ=255)

                                                                                              atAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTa                                      >  1:1471173/1‑140 (MQ=255)

                                                                                              atAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTa                                      >  2:60465/1‑140 (MQ=255)

                                                                                               tAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTaa                                     <  1:489722/140‑1 (MQ=255)

                                                                                                aaGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAAc                                    <  2:757243/140‑1 (MQ=255)

                                                                                                aaGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAAc                                    <  1:105421/140‑1 (MQ=255)

                                                                                                   cGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTgg                                 >  2:1451367/1‑140 (MQ=255)

                                                                                                   cGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTgg                                 >  2:1107416/1‑140 (MQ=255)

                                                                                                     tCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAGGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGtt                               >  1:1413129/1‑140 (MQ=255)

                                                                                                     tCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAATATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGtt                               >  2:1012013/1‑140 (MQ=255)

                                                                                                     tCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGtt                               <  2:33165/140‑1 (MQ=255)

                                                                                                     tCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGtt                               <  1:961598/140‑1 (MQ=255)

                                                                                                     tCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGtt                               <  1:395509/140‑1 (MQ=255)

                                                                                                     tCAGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGtt                               <  2:356699/140‑1 (MQ=255)

                                                                                                       aGGAGAAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCa                             >  1:568982/1‑140 (MQ=255)

                                                                                                          agaAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTg                          <  2:1221637/140‑1 (MQ=255)

                                                                                                          agaAACAACATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTg                          <  1:1215105/140‑1 (MQ=255)

                                                                                                             aacaacATCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTa                       <  2:514618/140‑1 (MQ=255)

                                                                                                              acaacaTCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTac                      >  2:874286/1‑140 (MQ=255)

                                                                                                                   aTCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACggg                 <  2:686909/140‑1 (MQ=255)

                                                                                                                    tCTGCTGAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTACTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGa                <  1:595915/140‑1 (MQ=255)

                                                                                                                      tgctgAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAg              >  2:945947/1‑140 (MQ=255)

                                                                                                                          gAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATaa          >  1:15780/1‑140 (MQ=255)

                                                                                                                          gAATGATGCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATaa          >  2:926209/1‑140 (MQ=255)

                                                                                                                             tgatgCTGTTG‑AAAGTTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTa       >  1:1583647/1‑140 (MQ=255)

                                                                                                                              gatgCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTAt      <  1:600102/140‑1 (MQ=255)

                                                                                                                               atgCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTATc     <  1:791200/140‑1 (MQ=255)

                                                                                                                                tgCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTATCa    >  1:39985/1‑140 (MQ=255)

                                                                                                                                tgCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTATCa    >  1:275087/1‑140 (MQ=255)

                                                                                                                                tgCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTATCa    >  1:101630/1‑140 (MQ=255)

                                                                                                                                tgCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACCGGTTCAGTGCTACACGGGAAGATAAGTATCa    >  1:558398/1‑140 (MQ=255)

                                                                                                                                 gCTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTATCaa   <  2:170984/140‑1 (MQ=255)

                                                                                                                                  cTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTATCAac  >  2:640867/1‑140 (MQ=255)

                                                                                                                                  cTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTATCAac  >  1:520989/1‑140 (MQ=255)

                                                                                                                                  cTGTTG‑AAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTATCAac  >  1:234282/1‑140 (MQ=255)

GGATTTCTGGCATCAATGGCTTTGGCCCGTTCCCGGGGCATTGATATTACCGTGGTGACGGATAAAAACTGCAATATAGCGCATGTCGATGATGATAAGCGTCAGGAGAAACAACATCTGCTGAATGATGCTGTTGAAAAGCTCAATAAGATGGGTATCGCTACGAAATTGGTTAATCGTGTTCACAGCAAAATTGTGATTGAGGATGAAGAACTGCTGTGTGTCGGATCTTTTAACTGGTTCAGTGCTACACGGGAAGATAAGTATCAAC  >  NC_000913/4535672‑4535942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A