Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	123	51.0	1731148	99.3%	1719029	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,546,320	A→G	T409A (ACA→GCA)	fimD →	type I fimbriae usher protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,546,320	0	A	G	100.0%	263.4 / NA	72	T409A (ACA→GCA)	fimD	type I fimbriae usher protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (38/34); total (38/34)

CAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGC  >  NC_000913/4546186‑4546455

cAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAata                                                                                                                                    >  2:180893/1‑140 (MQ=255)

 aGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAatat                                                                                                                                   >  1:623408/1‑140 (MQ=255)

   tCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAatatat                                                                                                                                 >  2:168019/1‑140 (MQ=255)

                   tGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTgg                                                                                                                 >  2:32416/1‑140 (MQ=255)

                     aaGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCg                                                                                                               <  2:449513/140‑1 (MQ=255)

                              cTCGTTATTCTATTCCGGCAGGAAAATCCCGAAGTGGAAAGGGGCAG‑AAGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATc                                                                                                     <  2:463621/140‑1 (MQ=255)

                               tCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATc                                                                                                     >  2:678231/1‑140 (MQ=255)

                                   tATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATc                                                                                                     <  1:794640/136‑1 (MQ=255)

                                   tATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATc                                                                                                     >  2:794640/1‑136 (MQ=255)

                                       ccATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCtttt                                                                                             <  2:216902/140‑1 (MQ=255)

                                           tACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAAtt                                                                                         >  1:363769/1‑140 (MQ=255)

                                           tACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAAtt                                                                                         >  2:285646/1‑140 (MQ=255)

                                           tACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAAtt                                                                                         >  2:812945/1‑140 (MQ=255)

                                             cGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTc                                                                                       >  1:183698/1‑140 (MQ=255)

                                              ggCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCg                                                                                      <  1:285646/140‑1 (MQ=255)

                                               gCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCgg                                                                                     >  1:164539/1‑140 (MQ=255)

                                               gCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCgg                                                                                     >  2:624634/1‑140 (MQ=255)

                                                cAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGt                                                                                    <  1:817324/140‑1 (MQ=255)

                                                cAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGt                                                                                    >  1:806681/1‑140 (MQ=255)

                                                           cGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGaaaaa                                                                         >  1:347610/1‑140 (MQ=255)

                                                           cGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGaaaaa                                                                         >  1:277185/1‑140 (MQ=255)

                                                             tAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGGTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACa                                                                       >  2:759753/1‑140 (MQ=255)

                                                             tAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTACACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACa                                                                       >  1:159001/1‑140 (MQ=255)

                                                               gTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATg                                                                     <  2:363769/140‑1 (MQ=255)

                                                                tGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATgg                                                                    >  1:750822/1‑140 (MQ=255)

                                                                tGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATgg                                                                    >  1:558483/1‑140 (MQ=255)

                                                                tGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATgg                                                                    >  2:749446/1‑140 (MQ=255)

                                                                  gAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATgggg                                                                  >  1:509478/1‑140 (MQ=255)

                                                                     aTGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCa                                                               >  1:466828/1‑140 (MQ=255)

                                                                      tGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCAc                                                              <  1:766923/140‑1 (MQ=255)

                                                                       gcgcAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCa                                                               >  2:451088/1‑138 (MQ=255)

                                                                       gcgcAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCa                                                               <  1:451088/138‑1 (MQ=255)

                                                                       gcgcAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACt                                                             >  2:767857/1‑140 (MQ=255)

                                                                        cgcAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTg                                                            >  2:553510/1‑140 (MQ=255)

                                                                         gcagcaGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTgg                                                           >  1:793852/1‑140 (MQ=255)

                                                                         gcagcaGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTgg                                                           >  2:580636/1‑140 (MQ=255)

                                                                          cagcagGAAAAACCCCGCTGTTTCCAGACTTCATTACTCCACGGCCTTCCGGCTGGCTGGGCAATACATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTggg                                                          <  2:654472/140‑1 (MQ=255)

                                                                            gcagGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGgcg                                                        <  2:509478/140‑1 (MQ=255)

                                                                            gcagGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGgcg                                                        >  1:654472/1‑140 (MQ=255)

                                                                            gcagGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGgcg                                                        >  1:436140/1‑140 (MQ=255)

                                                                             cagGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGgcgc                                                       >  2:87109/1‑140 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  2:277185/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  1:32416/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  2:164539/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  2:347610/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  2:750822/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  2:436140/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  1:87109/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  1:553510/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  1:812945/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  2:466828/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  1:767857/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  1:580636/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  1:645412/140‑1 (MQ=255)

                                                                              agGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGct                                                      <  2:623408/140‑1 (MQ=255)

                                                                                  aaaaaCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCtctgt                                                  <  1:168019/140‑1 (MQ=255)

                                                                                                    gagTACATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAgg                                <  2:254649/140‑1 (MQ=255)

                                                                                                         cATTACTCCACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAAt                           <  1:180893/140‑1 (MQ=255)

                                                                                                                 cACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACt                   >  1:654094/1‑140 (MQ=255)

                                                                                                                 cACGGCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGCTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACt                   >  2:724236/1‑140 (MQ=255)

                                                                                                                    cgCCTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGTCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTcc                >  2:757714/2‑140 (MQ=255)

                                                                                                                       cTTCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGa             <  2:793423/140‑1 (MQ=255)

                                                                                                                        ttCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACtt                  <  2:60786/134‑1 (MQ=255)

                                                                                                                        ttCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACtt                  >  1:60786/1‑134 (MQ=255)

                                                                                                                        ttCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGAt            <  1:816719/140‑1 (MQ=255)

                                                                                                                        ttCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGAt            >  2:108194/1‑140 (MQ=255)

                                                                                                                        ttCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGAt            <  1:749446/140‑1 (MQ=255)

                                                                                                                        ttCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGAt            <  1:356768/140‑1 (MQ=255)

                                                                                                                        ttCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGAt            <  2:183698/140‑1 (MQ=255)

                                                                                                                        ttCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGAt            >  1:286448/1‑140 (MQ=255)

                                                                                                                         tCCGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATg           >  2:559322/1‑140 (MQ=255)

                                                                                                                          ccGGCTGGCTGGGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGa          <  2:558483/140‑1 (MQ=255)

                                                                                                                                  ctggGCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGc  >  2:856144/1‑140 (MQ=255)

CAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGGAAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGC  >  NC_000913/4546186‑4546455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A