Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A23 F60 I1 R1	21	86.7	2922664	98.3%	2872978	139.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,095,781	G→C	A228A (GCG→GCC)	yggS →	PLP homeostasis protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,095,781	0	G	C	100.0%	326.9 / NA	90	A228A (GCG→GCC)	yggS	PLP homeostasis protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (46/44); total (46/44)

GCTGTAGCATTTGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCGCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTACGCATCTGGATGCAGTGGGCTCATTGTGATTTT  >  NC_000913/3095647‑3095915

gCTGTAGCATTTGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGa                                                                                                                                   <  1:1316510/140‑1 (MQ=255)

    tAGCATTTGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTAc                                                                                                                               >  2:12605/1‑140 (MQ=255)

    tAGCATTTGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTAc                                                                                                                               >  1:152206/1‑140 (MQ=255)

        aTTTGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGa                                                                                                                                   <  2:234764/132‑1 (MQ=255)

        aTTTGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGCAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGa                                                                                                                                   >  1:234764/1‑132 (MQ=255)

         tttGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTCTCGGCACTGCAGTTTTTGGTGACCGTGATTACTCTaa                                                                                                                          >  1:583716/1‑140 (MQ=255)

           tGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGAtt                                                                                                                                 <  2:862365/131‑1 (MQ=255)

           tGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGAtt                                                                                                                                 >  1:862365/1‑131 (MQ=255)

           tGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTaaaa                                                                                                                        >  1:1377823/1‑140 (MQ=255)

                gACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATaa                                                                                                                   <  1:134897/140‑1 (MQ=255)

                gACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTGCGTATCGGCACTGCAAATTTTGGTGACCGTGATTACTCTAAAAAATaa                                                                                                                   >  2:629612/1‑140 (MQ=255)

                           cgcTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAgg                                                                                                        <  1:1307371/140‑1 (MQ=255)

                             cTACCCGCATATCGACACGCTCTCTCTGGGAATGTCAGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGaa                                                                                                      <  1:725648/140‑1 (MQ=255)

                             cTACCCGCATATCGACACGCTCACTCTGGGAATGTCGGACGATATGGATGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGaa                                                                                                      <  2:440184/140‑1 (MQ=255)

                               aCCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACg                                                                                                    >  2:1163101/1‑140 (MQ=255)

                                 ccGCATATCGACACGATCTCTCTGGTAATGTCGGACGGTATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGcc                                                                                                  <  1:629612/140‑1 (MQ=255)

                                    cATATCGACACGCTCTCGCTGGGAATGTCGGGCGATATGTAAGCCGCCCTTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATg                                                                                               <  2:425304/140‑1 (MQ=255)

                                       atCGACACTCTCTCTCCGGGAATGTCGGACGGTGTAGAATCCGCCATTCCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAAt                                                                                            <  2:672481/140‑1 (MQ=255)

                                        tCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATa                                                                                           >  1:1282731/1‑140 (MQ=255)

                                        tCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATa                                                                                           >  2:286526/1‑140 (MQ=255)

                                          gACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACg                                                                                         >  1:16237/1‑140 (MQ=255)

                                          gACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACg                                                                                         >  1:76129/1‑140 (MQ=255)

                                              cGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCTCGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGa                                                                                     >  2:943855/1‑140 (MQ=255)

                                               gCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGAc                                                                                    >  2:1414159/1‑140 (MQ=255)

                                                 tctctctGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGACTTAGAGCAACGCCATGAATACGTTGACtt                                                                                  >  1:672481/1‑140 (MQ=255)

                                                       tGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCCAAAAAATAAGGACTTAAAGGAACGCAATGAATACGTTGACTTTCCTGc                                                                            >  2:572029/1‑140 (MQ=255)

                                                         ggAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCtt                                                                          >  1:1106351/1‑140 (MQ=255)

                                                          gAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAAGTAAAGGACCGCCATAAATACGTTGACTTTCCTGCttt                                                                         >  1:599488/1‑140 (MQ=255)

                                                             tGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCaa                                                                      >  2:353913/1‑140 (MQ=255)

                                                             tGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCaa                                                                      >  2:1433472/1‑140 (MQ=255)

                                                             tGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCaa                                                                      >  2:1340388/1‑140 (MQ=255)

                                                             tGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCaa                                                                      >  1:1455670/1‑140 (MQ=255)

                                                             tGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCaa                                                                      >  2:1020216/1‑140 (MQ=255)

                                                             tGTCGGACGATATGGAACCCGCTATTGCGGCAGGTCGCACGATGGTTCCTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCaa                                                                      <  2:385480/140‑1 (MQ=255)

                                                               tCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACg                                                                    >  2:1154126/1‑140 (MQ=255)

                                                               tCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACg                                                                    >  2:100448/1‑140 (MQ=255)

                                                               tCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACg                                                                    >  2:61989/1‑140 (MQ=255)

                                                               tCGGACGATATGGAAGCCGCCATTGCGGCAGGTACCACGATGGTTCGGATCCGCACTGCCATTTTTGGTGCCCGGGATTACTCTAAAAAATTAGGAATTAAAAGAACGCCATGAATACGGTGACTTTCCTGCTTTGAACg                                                                    >  2:491656/1‑140 (MQ=255)

                                                                   aCGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCa                                                                >  1:1061580/1‑140 (MQ=255)

                                                                     gATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCAtt                                                              <  2:124158/140‑1 (MQ=255)

                                                                     gATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCAtt                                                              <  2:1455670/140‑1 (MQ=255)

                                                                     gATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCAtt                                                              <  1:12605/140‑1 (MQ=255)

                                                                     gATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCAtt                                                              <  1:96906/140‑1 (MQ=255)

                                                                     gATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCAtt                                                              <  2:1106351/140‑1 (MQ=255)

                                                                     gATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCAtt                                                              <  1:1420558/140‑1 (MQ=255)

                                                                      atatGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTg                                                             <  1:223786/140‑1 (MQ=255)

                                                                      agatGGAAGCCGCCAGTGCGGCCGGTAGCTCGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTg                                                             <  1:644803/138‑1 (MQ=255)

                                                                       tatGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGa                                                            >  1:1395333/1‑140 (MQ=255)

                                                                       tatGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGa                                                            >  1:909654/1‑140 (MQ=255)

                                                                        atGGAAGCCGCCATTGCGGCAGGTATCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  1:597316/140‑1 (MQ=255)

                                                                        atGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTGCTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  1:943855/140‑1 (MQ=255)

                                                                        atGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  1:1340388/140‑1 (MQ=255)

                                                                        atGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  2:341336/140‑1 (MQ=255)

                                                                        atGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  2:1377823/140‑1 (MQ=255)

                                                                        atGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  2:1320567/140‑1 (MQ=255)

                                                                        atGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  2:152206/140‑1 (MQ=255)

                                                                        atGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  2:118596/140‑1 (MQ=255)

                                                                        atGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  2:1061580/140‑1 (MQ=255)

                                                                        atGGAAGCCGCCATTGCGGCAGATAGCACCATGGTTCTTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  1:653852/140‑1 (MQ=255)

                                                                        atGGAAGCCGCCATTCCGGCAGCTACCACTATGGTTCCTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAg                                                           <  1:421197/140‑1 (MQ=255)

                                                                         tGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGa                                                            >  1:354253/1‑138 (MQ=255)

                                                                         tGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGa                                                            <  2:354253/138‑1 (MQ=255)

                                                                          ggAAGCCGCCATTGCAGCAGGTGGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCt                                                         <  1:626713/140‑1 (MQ=255)

                                                                            aaGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGt                                                       <  1:353913/140‑1 (MQ=255)

                                                                            aaGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGt                                                       <  1:346509/140‑1 (MQ=255)

                                                                             aGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGATTACGTTGTCTTTCCTGATTTCGACGGTCATTGAGCTGta                                                      >  2:456589/1‑140 (MQ=255)

                                                                             aGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGta                                                      <  1:100448/140‑1 (MQ=255)

                                                                              gccgccATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGtat                                                     >  1:97098/1‑140 (MQ=255)

                                                                                 gccATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGGCTTGCCTGCTTTAAACGGTCATTGAGCTGTATAcc                                                  >  2:421197/1‑140 (MQ=255)

                                                                                 gccATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATAcc                                                  >  1:1315713/1‑140 (MQ=255)

                                                                                 gccATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATAcc                                                  >  2:302493/1‑140 (MQ=255)

                                                                                 gccATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATAcc                                                  >  1:23679/1‑140 (MQ=255)

                                                                                 gccATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATAcc                                                  >  1:17426/1‑140 (MQ=255)

                                                                                 gccATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATAcc                                                  >  1:331164/1‑140 (MQ=255)

                                                                                 gccATTGCGGCAGGGAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACTTTGTCTTGCCTGCTTTTAACGCTCATTGAGCTGTATAcc                                                  >  2:612027/1‑140 (MQ=255)

                                                                                   cATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTGGACGTTCCTGCTTTCACCGGTTATTGAGCTGTATAccct                                                >  2:644803/1‑138 (MQ=255)

                                                                                         ggCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCt                                          <  2:16237/140‑1 (MQ=255)

                                                                                         ggCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCt                                          <  2:76129/140‑1 (MQ=255)

                                                                                           cAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGt                                        >  2:1126431/1‑140 (MQ=255)

                                                                                                  cACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTACg                                 <  2:1282731/140‑1 (MQ=255)

                                                                                                  cACGATGGTTCGTATCGGCACTCCAATTTTTTGTGCCCGTGATTACTCGAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTACg                                 <  2:583716/140‑1 (MQ=255)

                                                                                                     gATGGTTCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTACGCAt                              <  1:947588/140‑1 (MQ=255)

                                                                                                           tCGTATCGGCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTACGCATCTGGAt                        <  1:286526/140‑1 (MQ=255)

                                                                                                               aTCGGCACTGCAATTGTTGGTGGCCCTGATTACTCTATAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTACGCATCTGGATGCAg                    <  1:491656/140‑1 (MQ=255)

                                                                                                                   gCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTACGCATCTGGATGCAGTggt                >  1:1369484/1‑139 (MQ=255)

                                                                                                                   gCACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTACACCATGGTGCTGTTCTTACGCTTCTGGATGCAGTggg                >  1:515215/1‑140 (MQ=255)

                                                                                                                    cACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGGGCTGTATACCATGGTGCTGTTATTACGCAt                              >  1:1186700/1‑125 (MQ=255)

                                                                                                                    cACTGCAATTTTTGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGGGCTGTATACCATGGTGCTGTTATTACGCAt                              <  2:1186700/125‑1 (MQ=255)

                                                                                                                              tttGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTAAACCATGGTACTGATATTACGCATCTTGATGGAGTGGGCTCATTGTGAt     >  2:414615/1‑140 (MQ=255)

                                                                                                                               ttGGTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTACGCATCTGGATGCAGTGGGCTCATTGTGAtt    <  2:1315713/140‑1 (MQ=255)

                                                                                                                                 ggTGCCCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTACGCATCTGGATGCAGTGGGCTCATTGTGAtttt  >  2:23951/1‑140 (MQ=255)

GCTGTAGCATTTGCCGGACTGAAAACGCGCTACCCGCATATCGACACGCTCTCTCTGGGAATGTCGGACGATATGGAAGCCGCCATTGCGGCAGGTAGCACGATGGTTCGTATCGGCACTGCAATTTTTGGTGCGCGTGATTACTCTAAAAAATAAGGAATTAAAGGAACGCCATGAATACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTGTATACCATGGTGCTGTTATTACGCATCTGGATGCAGTGGGCTCATTGTGATTTT  >  NC_000913/3095647‑3095915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A