Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F60 I1 R1 14 93.5 3190714 98.8% 3152425 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,852,675 C→G G37A (GGT→GCT)  ilvB ← acetohydroxy acid synthase I subunit IlvB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,852,6750CG100.0% 211.8 / NA 62G37A (GGT→GCT) ilvBacetohydroxy acid synthase I subunit IlvB
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (27/35);  total (27/35)

AGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAACCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGAC  >  NC_000913/3852538‑3852811
                                                                                                                                         |                                                                                                                                        
aGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCg                                                                                                                                        <  1:1026899/140‑1 (MQ=255)
       aCAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATTGTATACGGGCAGGATAGAAGCGCCCGGaa                                                                                                                                 >  1:578168/1‑140 (MQ=255)
           aCCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGcc                                                                                                                             >  1:208684/1‑140 (MQ=255)
           aCCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGcc                                                                                                                             >  1:1565091/1‑140 (MQ=255)
            ccgccgGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCTGAATATGGCGGATTTGCGTGCTTTGGCTTTAGGCATCGTAAACAGGC‑GGGTAGAAGCGCCCGGGAGGcccg                                                                                                                           >  2:1436246/1‑138 (MQ=255)
            ccgccgGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCt                                                                                                                            >  1:958178/1‑140 (MQ=255)
             cgccgGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGC‑GGATAGAAGCGCCCGGAATGCCTGt                                                                                                                          <  1:1436246/140‑1 (MQ=255)
              gccgGTTTACCGTCGGTGCGCGCCATTCCCTGAGTGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCAGCGTAAACAGGCAGGGTAGAAGGGCCCGGAATGCCTGt                                                                                                                          >  1:478988/1‑140 (MQ=255)
              gccgGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGt                                                                                                                          <  1:391924/140‑1 (MQ=255)
                gggTTTACCGTCGGTGCGCGCCCTTCCCTGATCGATAAATCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTca                                                                                                                        <  2:507281/139‑1 (MQ=255)
                cgGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGTATAGAAGCGCCCGGAATGCCTGTca                                                                                                                        >  2:1308343/1‑140 (MQ=255)
                 ggTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTcac                                                                                                                       <  2:828840/140‑1 (MQ=255)
                 ggTTTACCGTCGGTGCGCGCCAGTCCCTGAGGGATAAAGGCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTcac                                                                                                                       <  2:652441/140‑1 (MQ=255)
                     tACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATc                                                                                                                   >  1:1235338/1‑140 (MQ=255)
                          tCGGTGCGCGCCATTACCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGGTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAAt                                                                                                              >  1:339056/1‑140 (MQ=255)
                            ggTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGGGCCCGGGATGCCTTTCACAATCTTAATGc                                                                                                            >  1:507281/1‑140 (MQ=255)
                            ggTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGc                                                                                                            <  2:334600/140‑1 (MQ=255)
                            ggTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGc                                                                                                            >  1:935066/1‑140 (MQ=255)
                            ggTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCAGAATGCCTGt                                                                                                                          <  1:852817/126‑1 (MQ=255)
                            ggTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCAGAATGCCTGt                                                                                                                          >  2:852817/1‑126 (MQ=255)
                             gTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGcc                                                                                                           >  2:222405/1‑140 (MQ=255)
                                cgcgcCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCctg                                                                                                        <  2:1235338/140‑1 (MQ=255)
                                cgcgcCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCctg                                                                                                        <  2:259981/140‑1 (MQ=255)
                                cgcgcCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCctg                                                                                                        <  1:139915/140‑1 (MQ=255)
                                               gCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAgg                                                                                              <  1:313333/135‑1 (MQ=255)
                                               gCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAgg                                                                                              >  2:313333/1‑135 (MQ=255)
                                               gCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATg                                                                                         <  2:1565091/140‑1 (MQ=255)
                                               gCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAAGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATg                                                                                         >  2:835966/1‑140 (MQ=255)
                                                  aTAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAAGCATCGTAAACAGGCAGGGTAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCCGCTGTTTCAGGAAAAGAAc                                                                                      >  2:100353/1‑140 (MQ=255)
                                                   tAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTTCGTGCTTTGGCTTAAAGGATCGTAAACAGGCAGGATAGAAGCGCCTCGAATGCCCTTCGCAATCTTAATGCTCTGCTGTTCCAGGAAATGAACg                                                                                     >  2:577781/1‑140 (MQ=255)
                                                   tAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAAAAGGCAGGATAGAAGCGCCCGGAATGCCCGTCGCAAACTTAATGCACTGCCGTTCCAGGAAATGaaag                                                                                     >  2:655907/1‑138 (MQ=255)
                                                        cccGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATaaa                                                                                <  1:981711/140‑1 (MQ=255)
                                                             gcCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTg                                                                           <  1:1136492/140‑1 (MQ=255)
                                                                     cATGACGGGCCAGAATACGGCGCATTTGCGTGCTTCGGCTTAAGGCATGGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTa                                                                   <  2:531716/140‑1 (MQ=255)
                                                                           gggCCAGAATATGGCGGATTTTCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAgcgc                                                             >  2:73430/1‑140 (MQ=255)
                                                                             gCCAGAATATGGCGGATTTGCGTGCTTTTGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCTGGAAATGAACGTTACATTCTGTGCCGGTAAAGCGCtt                                                           >  1:531716/1‑140 (MQ=255)
                                                                             gCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAAAAGGCAGGATAGAAGCGCCCCGAATGCCTGTCACCATCTTAATGCCCCGCTGTTCCAGGAAAAGAACGATAAATTCTGCGCCGGTAAAACGCtt                                                           >  2:1529414/1‑140 (MQ=255)
                                                                                aGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTAcg                                                        <  2:935066/140‑1 (MQ=255)
                                                                                    tatGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTc                                                    <  1:222405/140‑1 (MQ=255)
                                                                                       ggCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGATGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCGAGGAAATGGACGGTAAGTTCTGCGCGGGTAAAGCGCTTACGCGTCGAt                                                 >  2:436157/1‑140 (MQ=255)
                                                                                       ggCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGAt                                                 >  2:1375950/1‑140 (MQ=255)
                                                                                       ggCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGAt                                                 >  1:1401711/1‑140 (MQ=255)
                                                                                       ggCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGAt                                                 >  2:1280589/1‑140 (MQ=255)
                                                                                            aTTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGAtgttgt                                            >  2:965329/1‑140 (MQ=255)
                                                                                                gCGTGCTTTGGCTTACGGCATCGTACACATGCAGGATTGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGccc                                        <  1:655907/140‑1 (MQ=255)
                                                                                                    gCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAAc                                    <  1:965329/140‑1 (MQ=255)
                                                                                                       ttGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTg                                 <  2:958178/140‑1 (MQ=255)
                                                                                                        tGGCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGc                                >  2:1147675/1‑140 (MQ=255)
                                                                                                         ggCTTAAGGCATCGTCAACAGGTAGTATAGAAGCGCCCGGAATGCCTCTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGcc                               <  1:722943/140‑1 (MQ=255)
                                                                                                          gCTTAAGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAGGCGATTACGCGTTGATGTTGTGCCCGAACTTGCCa                              >  2:442431/1‑140 (MQ=255)
                                                                                                           cTTAAGGCATCGTAAGCAGGCACGACAGATGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCAt                             <  1:577781/140‑1 (MQ=255)
                                                                                                               aGGCATCGTAAACAGGCAGTATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTc                         <  1:1308343/140‑1 (MQ=255)
                                                                                                               aGGCATCGTAAACAGGCAGGATAGAGGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTc                         <  1:100353/140‑1 (MQ=255)
                                                                                                               aGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTc                         <  1:1375950/140‑1 (MQ=255)
                                                                                                               aGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGGCACAATCTTAATGCCCTGGTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGGAAAGCGCGTGCTCCTGCATGTTGTGGCCGAACTTCCCATGGTc                         >  2:722943/1‑140 (MQ=255)
                                                                                                               aGGCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCATGTCACAACCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTc                         <  2:578168/140‑1 (MQ=255)
                                                                                                               aGGCATCGTAAACAGCCAGGATCGAAGCGCCCGGAATACCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTc                         <  1:436157/140‑1 (MQ=255)
                                                                                                                ggCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGTCGGTGAAGCGCTGACGAGTCGATGTTGTGCCCGAACTTGCCATGCTcc                        >  2:641240/1‑140 (MQ=255)
                                                                                                                ggCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTcc                        <  2:208684/140‑1 (MQ=255)
                                                                                                                ggCATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTcc                        >  1:280308/1‑140 (MQ=255)
                                                                                                                  cATCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAg                      <  1:73430/140‑1 (MQ=255)
                                                                                                                    tCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCa                              >  1:1171210/1‑130 (MQ=255)
                                                                                                                    tCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCa                              <  2:1171210/130‑1 (MQ=255)
                                                                                                                    tCGTAAACAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTc                    >  2:779248/1‑140 (MQ=255)
                                                                                                                          aCAGGCAGGATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTttc              >  2:969089/1‑140 (MQ=255)
                                                                                                                              gcaggATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTtcttct          >  2:1380608/1‑140 (MQ=255)
                                                                                                                                 ggATAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTggg       >  2:1301417/1‑140 (MQ=255)
                                                                                                                                   aTAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGcc     <  1:1301417/140‑1 (MQ=255)
                                                                                                                                   aTAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGcc     <  1:1529414/140‑1 (MQ=255)
                                                                                                                                   aTAGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGcc     <  1:383671/140‑1 (MQ=255)
                                                                                                                                     aGAAGCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGa   <  1:1280589/140‑1 (MQ=255)
                                                                                                                                      gAAGCGCCCGGAATGACTGTCATAACCTTGATGCCCTCCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGAc  <  1:442431/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
AGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATATGGCGGATTTGCGTGCTTTGGCTTAAGGCATCGTAAACAGGCAGGATAGAACCGCCCGGAATGCCTGTCACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGAC  >  NC_000913/3852538‑3852811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A