Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F60 I1 R1	14	93.5	3190714	98.8%	3152425	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,505,287	A→G	M1M (ATG→GTG) †	yjhC →	KpLE2 phage‑like element; putative oxidoreductase YjhC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,505,287	0	A	G	100.0%	725.0 / NA	193	M1M (ATG→GTG) †	yjhC	KpLE2 phage‑like element; putative oxidoreductase YjhC
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (98/95); total (98/95)

Only 100 of 194 total aligned reads displayed.

TTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTATGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCAGT  >  NC_000913/4505151‑4505422

tttCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGa                                                                                                                                      >  1:380990/1‑140 (MQ=255)

 ttCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGat                                                                                                                                     >  1:1591553/1‑140 (MQ=255)

    aGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCTGTGGCTAATTGATGGGAGGCTTTGTGattaa                                                                                                                                  >  2:534021/1‑140 (MQ=255)

    aGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGattaa                                                                                                                                  >  2:283122/1‑140 (MQ=255)

    aGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGattaa                                                                                                                                  >  2:214228/1‑140 (MQ=255)

         attatGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGTA‑TCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTGATAAACTAGCCGAGGCGAAATGATTGGAGGGTTTGTGATTAATTATgg                                                                                                                            >  2:426834/1‑140 (MQ=255)

          ttatGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATgg                                                                                                                            <  1:283122/140‑1 (MQ=255)

           tatGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGat                                                                                                                                     <  1:987902/130‑1 (MQ=255)

                cTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCgttgt                                                                                                                      <  1:1114207/140‑1 (MQ=255)

                cTTAGGTGTTTCATTATGCATTATTACGGTTACATACTCAGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCgttgt                                                                                                                      <  2:642970/140‑1 (MQ=255)

                 ttAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCgttgtt                                                                                                                     >  2:1179678/1‑140 (MQ=255)

                  tAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGttgttg                                                                                                                    <  2:61089/140‑1 (MQ=255)

                    ggTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTtgttggt                                                                                                                  >  2:125302/1‑140 (MQ=255)

                    ggTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTtgttggt                                                                                                                  >  2:390000/1‑140 (MQ=255)

                     gtgtTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTtgttggtg                                                                                                                 <  1:392834/140‑1 (MQ=255)

                     gtgtTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTGGTGATTAATAATGGCGTtgttggtg                                                                                                                 >  1:554184/1‑140 (MQ=255)

                         ttCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGTTTTGTGATTAATTATGGCGTtgttggtgttgg                                                                                                             >  2:1186376/1‑140 (MQ=255)

                         ttCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTtgttggtgttgg                                                                                                             >  1:994395/1‑140 (MQ=255)

                          tCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGa                                                                                                            >  1:1165939/1‑140 (MQ=255)

                              tattCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACt                                                                                                        >  2:854463/1‑140 (MQ=255)

                              tattCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGAAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACt                                                                                                        >  1:1225231/1‑140 (MQ=255)

                                ttCATTGTTACGGTCGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACttt                                                                                                      >  2:969787/1‑140 (MQ=255)

                                   aTTGTTACGGTTGTA‑CCTCTGCCTTCTTACTTTTGTTCGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGgcg                                                                                                  <  1:426834/140‑1 (MQ=255)

                                    ttGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGgcg                                                                                                  <  2:1225231/140‑1 (MQ=255)

                                     tGTTACGGTTGCATTCTTTGCCATATTAATTATGTAAGTAGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGgcgc                                                                                                 <  2:495887/140‑1 (MQ=255)

                                     tGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGTTTAATTAAGGCCTTGTTGGTGTTGGATACTTTGgcgc                                                                                                 >  1:537442/1‑140 (MQ=255)

                                     tGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGgcgc                                                                                                 >  1:316261/1‑140 (MQ=255)

                                     tGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGgcgc                                                                                                 >  2:344420/1‑140 (MQ=255)

                                     tGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGgcg                                                                                                  >  1:248975/1‑139 (MQ=255)

                                     tGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGgcg                                                                                                  <  2:1410267/139‑1 (MQ=255)

                                     tGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGgcg                                                                                                  >  1:1410267/1‑139 (MQ=255)

                                      gTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGa                                                                                                            >  2:1549503/1‑128 (MQ=255)

                                               gCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCt                                                                                       >  2:1054860/1‑140 (MQ=255)

                                               gCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCt                                                                                       <  2:1467302/140‑1 (MQ=255)

                                               gCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCt                                                                                       <  2:380990/140‑1 (MQ=255)

                                               gCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCt                                                                                       <  2:1305021/140‑1 (MQ=255)

                                               gCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCt                                                                                       >  1:337242/1‑140 (MQ=255)

                                               gCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCt                                                                                       <  2:1105824/140‑1 (MQ=255)

                                                 aTTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCg                                                                                     >  1:1264845/1‑140 (MQ=255)

                                                     tctGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCg                                                                                     <  1:1189098/136‑1 (MQ=255)

                                                       tGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTTTGGCGTTGTTGGCGGTGGATACTTTGGCGCAAAATTAGCGCGTTTTAt                                                                               >  2:744353/1‑140 (MQ=255)

                                                       tGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTAt                                                                               >  2:896687/1‑140 (MQ=255)

                                                       tGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTAt                                                                               >  1:1200809/1‑140 (MQ=255)

                                                       tGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGGAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTAt                                                                               >  1:1237631/1‑140 (MQ=255)

                                                        gCCTTATTAATTTTGTTAGTTGCTTCTGACATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATg                                                                              <  1:498887/140‑1 (MQ=255)

                                                         ccTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGa                                                                             >  2:1564607/1‑140 (MQ=255)

                                                         ccTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGa                                                                             <  1:48394/140‑1 (MQ=255)

                                                         ccTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCATTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGa                                                                             <  2:141002/140‑1 (MQ=255)

                                                         ccTTATTAATTTTGTTAGTTGGCTTTGATATGCCAGGTATAATTTATATACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGa                                                                             <  2:565030/140‑1 (MQ=255)

                                                         ccTTATTAATTTTGTGAGTTGGATTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGa                                                                             <  1:647894/140‑1 (MQ=255)

                                                         ccTTATTAATTTTGTCAGTTGGTTTTGATCTTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGa                                                                             <  1:492060/140‑1 (MQ=255)

                                                         ccTTATTAATTTTGTCAGTTGGTTTTGATATTCCAGGCAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGa                                                                             <  1:610585/140‑1 (MQ=255)

                                                         ccTTATTAATTTTGTCAGTTGGATTAGATATTCCAGGCAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGa                                                                             <  1:744353/140‑1 (MQ=255)

                                                           ttattaATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAat                                                                           <  1:215054/140‑1 (MQ=255)

                                                           ttattaATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAat                                                                           <  1:169142/140‑1 (MQ=255)

                                                             attaATTTTGTTATTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGa                                                                             >  1:1056485/1‑136 (MQ=255)

                                                              ttaATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATg                                                                        >  2:1389337/1‑140 (MQ=255)

                                                                 aTTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCAt                                                                     >  1:11390/1‑140 (MQ=255)

                                                                   tttGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGa                                                                   >  1:791024/1‑140 (MQ=255)

                                                                                 ttGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTa                                                     <  2:1591553/140‑1 (MQ=255)

                                                                                 ttGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTa                                                     <  1:1478714/140‑1 (MQ=255)

                                                                                 ttGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTa                                                     <  1:1048767/140‑1 (MQ=255)

                                                                                  tGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTAc                                                    <  1:1181544/140‑1 (MQ=255)

                                                                                  tGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTAc                                                    <  1:854463/140‑1 (MQ=255)

                                                                                  tGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTAc                                                    <  1:1389337/140‑1 (MQ=255)

                                                                                    atatTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACAt                                                  <  1:1557020/140‑1 (MQ=255)

                                                                                      atTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACAtgt                                                <  2:791024/140‑1 (MQ=255)

                                                                                      atTCCAGGTAAAATTTATAAACAATCCGTGGTTTAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACAtgt                                                <  2:722766/140‑1 (MQ=255)

                                                                                         ccAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGta                                             >  2:1486743/1‑140 (MQ=255)

                                                                                           aGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGtata                                           <  2:1190426/140‑1 (MQ=255)

                                                                                            ggTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGAATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACAt                                                  >  1:1219560/1‑132 (MQ=255)

                                                                                            ggTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGAATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACAt                                                  <  2:1219560/132‑1 (MQ=255)

                                                                                              tAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACAtg                                                 >  1:137506/1‑131 (MQ=255)

                                                                                                 aaTTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATcc                                     >  2:298207/1‑140 (MQ=255)

                                                                                                            tATCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGgag                          <  2:261214/140‑1 (MQ=255)

                                                                                                             aTCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGgaga                         >  1:794719/1‑140 (MQ=255)

                                                                                                              tCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAACTTACATGTGTATACGATCCTGAAAATGGAGaa                        >  2:319349/1‑140 (MQ=255)

                                                                                                              tCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGaaa                                >  2:237017/1‑132 (MQ=255)

                                                                                                              tCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGaa                        >  2:1536806/1‑140 (MQ=255)

                                                                                                              tCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGaa                        >  2:1362792/1‑140 (MQ=255)

                                                                                                              tCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGaa                        >  1:1521762/1‑140 (MQ=255)

                                                                                                              tCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGaa                        >  2:402209/1‑140 (MQ=255)

                                                                                                              tCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGaa                        >  1:1024748/1‑140 (MQ=255)

                                                                                                              tCCGTGGCTAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATACATGATAATGCAAAAAATACATGTGAATACTATCCTGAAAATGGAGaa                        >  2:628730/1‑140 (MQ=255)

                                                                                                                      tAAATGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGc                >  1:1175259/1‑140 (MQ=255)

                                                                                                                        aaTGATTGGAGGCTTTGTGATTAATTATGTCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGccc              <  1:628730/140‑1 (MQ=255)

                                                                                                                        aaTGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGccc              >  1:923375/1‑140 (MQ=255)

                                                                                                                        aaTGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGccc              >  1:1583175/1‑140 (MQ=255)

                                                                                                                        aaTGATTGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGccc              <  1:125302/140‑1 (MQ=255)

                                                                                                                              tGGAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAAt        >  2:1016929/1‑140 (MQ=255)

                                                                                                                                gAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTg      <  2:899490/140‑1 (MQ=255)

                                                                                                                                gAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTg      <  2:91455/140‑1 (MQ=255)

                                                                                                                                gAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTg      <  2:1237631/140‑1 (MQ=255)

                                                                                                                                gAGGCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTg      <  2:1144131/140‑1 (MQ=255)

                                                                                                                                 aGGCTTTGTGATTAATTATGGCTTTGTTGGTGTTGGATACTTTGGCGCCGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGc     <  2:702422/140‑1 (MQ=255)

                                                                                                                                  ggCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCa    <  1:969787/140‑1 (MQ=255)

                                                                                                                                  ggCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCa    <  1:1016929/140‑1 (MQ=255)

                                                                                                                                  ggCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTACCCGTGAATTGCa    <  1:896687/140‑1 (MQ=255)

                                                                                                                                   gCTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCAg   <  2:1166712/140‑1 (MQ=255)

                                                                                                                                    cTTTGTGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCAgt  <  1:910634/140‑1 (MQ=255)

TTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGATTGGAGGCTTTATGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCAGT  >  NC_000913/4505151‑4505422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A