Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F60 I1 R1
|
16 |
66.9 |
2298070 |
98.1% |
2254406 |
138.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,076,329 |
G→A |
A376A (GCC→GCT) |
yggP ← |
putative zinc‑binding dehydrogenase YggP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,076,329 | 0 | G | A | 96.6%
| 165.6
/ ‑2.0
| 59 | A376A (GCC→GCT) | yggP | putative zinc‑binding dehydrogenase YggP |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (29/28); total (30/29) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.68e-01 |
ACGCCAAATTGTGCCAGCAGATATTTCTCGGCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGG > NC_000913/3076204‑3076451
|
aCGCCAAATTGTGCCAGCAGATATTTCTCGGCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCAt > 1:987194/1‑140 (MQ=255)
aaTTGTGCCAGCAGATATTTCTCGGCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCAc > 2:946877/1‑140 (MQ=255)
ttGTGCCAGCAGATATTTCTCGGCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGc < 2:145638/140‑1 (MQ=255)
ttGTGCCAGCAGATATTCCTCGTCCTGTTCACTCCAGATACCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGc < 2:418422/140‑1 (MQ=255)
gCCAGCAGATATTTCTCAGCCTATTCATTCCAGATCCCGGGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGtt < 2:464216/140‑1 (MQ=255)
cagATATTTCTCGGCCTGTTCATTCCAGATACCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATaaa > 2:694873/1‑140 (MQ=255)
atatTTCTCGGCCTGCTCATTCGAGCTGCAGTGCGTTCCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGa < 1:338431/140‑1 (MQ=255)
tatTTCTCGGCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAg > 2:574296/1‑140 (MQ=255)
tcGGCCTGTTCATTCCAGATGCGGTCCGTGTCCTCACGCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGtttttt < 1:400216/140‑1 (MQ=255)
cGGCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTa > 2:186136/1‑140 (MQ=255)
gCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGGGGCCTGGTCACGCCGTTTTAAATGAGTTTTTTAcc > 2:400216/1‑140 (MQ=255)
gCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTa < 1:997987/138‑1 (MQ=255)
gCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTa > 2:997987/1‑138 (MQ=255)
ccTGTTCATTCCAGATGCCGTGCGTTTCCTAAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCg > 1:22513/1‑140 (MQ=255)
cTGTTCATTCCAGATTCCGTGCCTTGCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGc < 1:410250/140‑1 (MQ=255)
cTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAAt > 1:696419/1‑126 (MQ=255)
cTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAAt < 2:696419/126‑1 (MQ=255)
cTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGc < 2:874016/140‑1 (MQ=255)
tCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGC‑AAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGatat > 1:1070713/1‑140 (MQ=255)
aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGat < 2:1130353/134‑1 (MQ=255)
aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGat > 1:1130353/1‑134 (MQ=255)
aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCgg > 1:238652/1‑140 (MQ=255)
aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCgg > 1:1131267/1‑140 (MQ=255)
aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCgg > 2:1110022/1‑140 (MQ=255)
aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCg > 2:884191/1‑139 (MQ=255)
aTGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCg < 1:884191/139‑1 (MQ=255)
gCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCa > 1:1112042/1‑140 (MQ=255)
ccGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGTTCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAg < 2:1131267/140‑1 (MQ=255)
ccGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAg < 1:574296/140‑1 (MQ=255)
gTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGTTCACGCCGGTATGAATGAGTTTTTTACCGCGAGGGATATCCGGCAGAt > 2:303719/1‑140 (MQ=255)
tGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAg < 2:847560/137‑1 (MQ=255)
tGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAg > 1:847560/1‑137 (MQ=255)
tttCCTCACCCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGC‑AAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCa < 2:1070713/140‑1 (MQ=255)
tttCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGc < 1:917255/140‑1 (MQ=255)
ttCCTCACCCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCa < 2:48624/140‑1 (MQ=255)
ttCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCa < 1:186136/140‑1 (MQ=255)
ttCCTAAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCa < 2:22513/140‑1 (MQ=255)
ccAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCt < 1:694873/140‑1 (MQ=255)
gCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGc > 2:1091727/1‑140 (MQ=255)
gCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGc > 1:205804/1‑140 (MQ=255)
cgcgCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCAc > 2:572829/1‑140 (MQ=255)
cgcgCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCAc < 1:946877/140‑1 (MQ=255)
ctTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAgg < 2:1112042/140‑1 (MQ=255)
tttAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGc < 1:807102/140‑1 (MQ=255)
ttAAACAGCGGATCGTTTTTGCCTTCTTCCGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGcc < 1:467918/140‑1 (MQ=255)
ttAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGcc < 2:205804/140‑1 (MQ=255)
gCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGGCGTTATAAATGAGTTTTTTACCAGCAGGGTTATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGata > 1:834268/1‑140 (MQ=255)
gCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGcc > 1:904042/1‑133 (MQ=255)
gCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGcc < 2:904042/133‑1 (MQ=255)
gCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGata > 1:1120999/1‑140 (MQ=255)
gCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGata > 2:94452/1‑140 (MQ=255)
gCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGata > 2:943494/1‑140 (MQ=255)
gCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGata > 2:801473/1‑140 (MQ=255)
cGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGACATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGCTTCGGGCACCGCATCCAGGCCACCGatat > 1:404181/1‑140 (MQ=255)
aTCGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATggg < 1:801473/140‑1 (MQ=255)
cGGTTTTGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGAGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTc < 2:987194/140‑1 (MQ=255)
ttGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCAc > 2:738883/1‑137 (MQ=255)
ttGCCTTTTTCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCAc < 1:738883/137‑1 (MQ=255)
tttttCGGCAAAATGGGCAATAGCAGTGGGCGGCATGGCCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAacg < 2:238652/140‑1 (MQ=255)
tttttCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAacg < 1:94452/140‑1 (MQ=255)
tCGGCAAAATCGGCAATAGCAGTGAGCGGCATGGTCACGCCGTTATAAATGGGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACgg > 1:610286/1‑140 (MQ=255)
|
ACGCCAAATTGTGCCAGCAGATATTTCTCGGCCTGTTCATTCCAGATGCCGTGCGTTTCCTCAACCAGCCGCGCCAACTCTTTAAACAGCGGATCGGTTTTGCCTTTTTCGGCAAAATCGGCAATGGCAGTGAGCGGCATGGTCACGCCGTTATAAATGAGTTTTTTACCGCCAGGGATATCCGGCAGATTGAGCACGGTTTCTGGCACCGCATCCAGGCCACCGATATGGGTCACCATAAACGACGG > NC_000913/3076204‑3076451
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
