Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A46 F60 I1 R1 20 83.7 2881312 98.9% 2849617 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,581,583 Δ1,845 bp IS1‑mediated [yhhY][yrhA] [yhhY], yhhZ, [yrhA]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3581583 3584083–3583428 1846–2501 91 [0] [20] 22 [yhhY]–[insB‑6] [yhhY],yhhZ,yrhA,insA‑6,[insB‑6]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1979270NA (NA)91 (1.070) 57/276 0.2 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 3581582 0 (0.000)coding (445/489 nt) yhhY N‑acetyltransferase YhhY

GATK/CNVnator alignment

N/A