Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A46 F60 I1 R1
|
20 |
83.7 |
2881312 |
98.9% |
2849617 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,581,583 |
Δ1,845 bp |
IS1‑mediated |
[yhhY]–[yrhA] |
[yhhY], yhhZ, [yrhA] |
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
| * |
* |
÷ |
NC_000913 |
3581583 |
3584083–3583428 |
1846–2501 |
91 [0] |
[20] 22 |
[yhhY]–[insB‑6] |
[yhhY],yhhZ,yrhA,insA‑6,[insB‑6] |
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 1979270 | NA (NA) | 91 (1.070) |
57/276 |
0.2 |
100% |
noncoding (1/768 nt) |
IS1 |
repeat region |
| ? | NC_000913 |
= 3581582 |
0 (0.000) | coding (445/489 nt) |
yhhY |
N‑acetyltransferase YhhY |
GATK/CNVnator alignment
N/A