Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	631,430	G→T	D513Y (GAT→TAT)	cstA →	carbon starvation protein A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	631,430	0	G	T	100.0%	239.4 / NA	67	D513Y (GAT→TAT)	cstA	carbon starvation protein A
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (32/35); total (32/35)

TGTGGCGTTCTGGTATCACTTCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCGATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCAGATGC  >  NC_000913/631294‑631565

tgtgGCGTTCTGGTATCACTTCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTAtt                                                                                                                                      <  2:1316020/140‑1 (MQ=255)

tgtgGCGTTCTGGTATCACTTCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTAtt                                                                                                                                      <  1:995014/140‑1 (MQ=255)

   ggCGTTCTGGTATCACTTCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCAc                                                                                                                                   <  2:1050353/140‑1 (MQ=255)

    gCGTTCTGGTATCACTTCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCAct                                                                                                                                  <  1:980678/140‑1 (MQ=255)

          cggTATCACTTCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACCCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGGCTCCTGGCCTGAAGCGGTCCTATTCActgcctgt                                                                                                                            >  2:61506/2‑139 (MQ=255)

            gTATCACTTCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTa                                                                                                                          <  1:1378788/140‑1 (MQ=255)

            gTATCACTTCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTa                                                                                                                          >  1:272747/1‑140 (MQ=255)

               tCACTTCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAAcc                                                                                                                       >  1:239271/1‑140 (MQ=255)

                   ttCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACctgct                                                                                                                   <  2:576739/140‑1 (MQ=255)

                      gCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGc                                                                                                                >  1:974725/1‑140 (MQ=255)

                      gCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGc                                                                                                                >  2:666320/1‑140 (MQ=255)

                      gCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGc                                                                                                                >  1:138429/1‑140 (MQ=255)

                          ttttGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACa                                                                                                            <  1:1152478/140‑1 (MQ=255)

                           tttgtttgAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTTCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAg                                                                                                           >  2:371896/1‑140 (MQ=255)

                           tttgtttgAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAg                                                                                                           >  2:163773/1‑140 (MQ=255)

                              gtttgAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAgcgc                                                                                                        >  1:631086/1‑140 (MQ=255)

                               tttgAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCt                                                                                                       <  1:1452002/140‑1 (MQ=255)

                                 tgAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCtgt                                                                                                     >  2:1067142/1‑140 (MQ=255)

                                         tGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTg                                                                                             >  2:525604/1‑140 (MQ=255)

                                         tGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTg                                                                                             >  2:644948/1‑140 (MQ=255)

                                               ttCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTgg                                                                                       <  1:522162/140‑1 (MQ=255)

                                                   gACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCt                                                                                   >  1:513614/1‑140 (MQ=255)

                                                    aCGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTa                                                                                  <  1:163773/140‑1 (MQ=255)

                                                      ggcggTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACt                                                                                <  2:1240316/140‑1 (MQ=255)

                                                        cggTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTACTGGCCTGAAGCAGACATATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTtc                                                                              <  1:193858/140‑1 (MQ=255)

                                                           tGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTtcctc                                                                           <  1:666320/140‑1 (MQ=255)

                                                              aTGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCAt                                                                        <  2:239271/140‑1 (MQ=255)

                                                              aTGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCAt                                                                        <  2:611099/140‑1 (MQ=255)

                                                              aTGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCAt                                                                        <  2:1401244/140‑1 (MQ=255)

                                                                       cgcgTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTg                                                               >  1:262635/1‑140 (MQ=255)

                                                                        gcgTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTgg                                                              <  1:644948/140‑1 (MQ=255)

                                                                             ctgcGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGAt                                                         >  2:969054/1‑140 (MQ=255)

                                                                              tgcGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATc                                                        >  2:64912/1‑140 (MQ=255)

                                                                               gcgcgcTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATcc                                                       >  2:1131635/1‑140 (MQ=255)

                                                                                cgcgcTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCg                                                      >  2:536467/1‑140 (MQ=255)

                                                                                      ttATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGggc                                                <  2:513614/140‑1 (MQ=255)

                                                                                      ttATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGggc                                                <  2:262066/140‑1 (MQ=255)

                                                                                      ttATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGggc                                                <  1:525604/140‑1 (MQ=255)

                                                                                      ttATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGggc                                                <  2:138429/140‑1 (MQ=255)

                                                                                      ttATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTAATCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGggc                                                <  1:1458207/140‑1 (MQ=255)

                                                                                      atATGATGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTACCTCCATCAGGGCGTGGTCGATCCGCTGggc                                                <  2:343059/139‑1 (MQ=255)

                                                                                        ttGTTGCAGGATCTGCTGGGCGTGGTGTCTACTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGggcgg                                              <  1:136261/139‑1 (MQ=255)

                                                                                        aTGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGggcgg                                              <  1:536467/140‑1 (MQ=255)

                                                                                        aTGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGggcgg                                              <  2:272747/140‑1 (MQ=255)

                                                                                          gTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTTGATCCGCTGggcggcg                                            <  2:631086/140‑2 (MQ=255)

                                                                                           ttGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCAt                                           <  1:1131635/140‑1 (MQ=255)

                                                                                              cAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTaa                                        <  2:974725/140‑1 (MQ=255)

                                                                                               aGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAac                                       >  2:1102258/1‑140 (MQ=255)

                                                                                               aGGATCTGCTGAGCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAac                                       >  1:787371/1‑140 (MQ=255)

                                                                                                         gggCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGc                             <  2:80231/140‑1 (MQ=255)

                                                                                                         gggCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGc                             <  1:1102258/140‑1 (MQ=255)

                                                                                                          ggCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGcc                            <  1:1067142/140‑1 (MQ=255)

                                                                                                          ggCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGcc                            <  2:787371/140‑1 (MQ=255)

                                                                                                           gCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCg                           <  2:1016391/140‑1 (MQ=255)

                                                                                                           gCGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCg                           <  1:293524/140‑1 (MQ=255)

                                                                                                            cGTGGTGTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGc                          >  1:1245262/1‑140 (MQ=255)

                                                                                                              tggtgTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTg                        <  1:64912/140‑1 (MQ=255)

                                                                                                               ggtgTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGt                       >  1:358168/1‑140 (MQ=255)

                                                                                                               ggtgTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGt                       >  1:236715/1‑140 (MQ=255)

                                                                                                               ggtgTCTCCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGt                       >  1:780059/1‑140 (MQ=255)

                                                                                                                    ctcCTGGCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGG‑‑‑CTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTAtt               >  1:141355/1‑140 (MQ=255)

                                                                                                                          gCCTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGcc            >  1:998335/1‑140 (MQ=255)

                                                                                                                            cTGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGGCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCaa          >  1:1380084/1‑140 (MQ=255)

                                                                                                                             tGAAGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAAc         >  1:1041661/1‑140 (MQ=255)

                                                                                                                               aaGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGTTCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCa       >  2:531804/1‑140 (MQ=255)

                                                                                                                               aaGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCa       >  2:1191068/1‑140 (MQ=255)

                                                                                                                               aaGCGGACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCa       >  2:261217/1‑140 (MQ=255)

                                                                                                                                    gACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCAGATGc  >  1:617818/1‑140 (MQ=255)

                                                                                                                                    gACCTATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCAGATGc  >  1:891128/1‑140 (MQ=255)

TGTGGCGTTCTGGTATCACTTCGCCATTTTGTTTGAAGCACTGTTTATTCTGACGGCGGTGGATGCAGGTACGCGTGCTGCGCGCTTTATGTTGCAGGATCTGCTGGGCGTGGTGTCTCCTGGCCTGAAGCGGACCGATTCACTGCCTGCTAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCAGATGC  >  NC_000913/631294‑631565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A