Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F48 I1 R1 76 74.1 2532288 99.0% 2506965 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 225,735 G→A intergenic (+160/‑24) alaV → / → rrlH tRNA‑Ala/23S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913225,7350GA100.0% 364.3 / NA 110intergenic (+160/‑24)alaV/rrlHtRNA‑Ala/23S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (48/62);  total (48/62)

Only 100 of 110 total aligned reads displayed.

CTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATT  >  NC_000913/225602‑225871
                                                                                                                                     |                                                                                                                                        
cTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGaa                                                                                                                                    >  2:796189/1‑140 (MQ=37)
 ttCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGaaa                                                                                                                                   <  2:237655/140‑1 (MQ=38)
        tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTc                                                                                                                            <  1:357232/140‑1 (MQ=255)
        tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTc                                                                                                                            >  2:580909/1‑140 (MQ=37)
        tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTc                                                                                                                            <  2:1043496/140‑1 (MQ=255)
        tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTc                                                                                                                            >  2:124922/1‑140 (MQ=37)
        tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTT‑AAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCg                                                                                                                           <  1:981805/140‑1 (MQ=255)
        agtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTc                                                                                                                            >  2:741451/2‑140 (MQ=37)
          tACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCgg                                                                                                                          <  1:45005/140‑1 (MQ=255)
           aCCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCggg                                                                                                                         <  2:213450/140‑1 (MQ=38)
           aCCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCggg                                                                                                                         >  1:32163/1‑140 (MQ=37)
           aCCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCggg                                                                                                                         <  2:87097/140‑1 (MQ=37)
           aCCTGCAAAGGATCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCggg                                                                                                                         >  1:1182135/1‑140 (MQ=255)
             cTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGtt                                                                                                                       <  2:901721/140‑1 (MQ=255)
               gCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTtgt                                                                                                                     <  2:400568/140‑1 (MQ=255)
                cAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTtgtg                                                                                                                    >  1:789853/1‑140 (MQ=37)
                cAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTtgtg                                                                                                                    >  1:711126/1‑140 (MQ=37)
                cAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTtgtg                                                                                                                    >  1:659145/1‑140 (MQ=37)
                cAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTtgtg                                                                                                                    >  1:561450/1‑140 (MQ=37)
                  aaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAg                                                                                                                  >  2:288243/1‑140 (MQ=37)
                  aaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAg                                                                                                                  >  2:1009972/1‑140 (MQ=37)
                    ggTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGt                                                                                                                >  2:906758/1‑140 (MQ=37)
                     gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGtt                                                                                                               >  2:177900/1‑140 (MQ=37)
                     gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGtt                                                                                                               >  1:78549/1‑140 (MQ=37)
                       tCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTaa                                                                                                             >  1:1022220/1‑140 (MQ=37)
                       tCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTaa                                                                                                             <  2:32163/140‑1 (MQ=38)
                       tCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTaa                                                                                                             <  2:5637/140‑1 (MQ=255)
                        cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAg                                                                                                            >  1:1132365/1‑140 (MQ=37)
                        cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAg                                                                                                            >  1:887745/1‑140 (MQ=37)
                           tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGa                                                                                                         >  2:462268/1‑140 (MQ=37)
                            gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAATATCTTCGGGTTGTGAGGTTAAGCGAc                                                                                                        <  2:887745/140‑1 (MQ=255)
                            gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGAc                                                                                                        <  1:426282/140‑1 (MQ=37)
                            gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGAc                                                                                                        <  2:1041900/140‑1 (MQ=37)
                            gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGAc                                                                                                        <  2:1001396/140‑1 (MQ=255)
                               aaGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTaa                                                                                                     <  1:1252638/140‑1 (MQ=37)
                               aaGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTaa                                                                                                     <  2:771011/140‑1 (MQ=255)
                               aaGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTaa                                                                                                     >  1:1152399/1‑140 (MQ=37)
                                  ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg                                                                                                  <  1:63782/140‑1 (MQ=255)
                                  ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg                                                                                                  >  1:1180702/1‑140 (MQ=38)
                                    ttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa                                                                                                <  1:1132472/140‑1 (MQ=38)
                                       ctctTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTacac                                                                                             <  2:709370/140‑1 (MQ=37)
                                       ctctTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTacac                                                                                             <  2:229194/140‑1 (MQ=37)
                                           ttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                                                                                         <  2:789853/140‑1 (MQ=37)
                                            tAAAAATCTGGTTCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTCGTGAGGTTAAGCGACTAAGCGTACACGGTgg                                                                                        >  2:297093/1‑140 (MQ=255)
                                            tAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTgg                                                                                        >  2:113399/1‑140 (MQ=37)
                                             aaaaaTCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGa                                                                                       <  2:1022220/140‑1 (MQ=37)
                                               aaaTCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATg                                                                                     <  1:79214/140‑1 (MQ=37)
                                                 aTCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGcc                                                                                   <  1:288243/140‑1 (MQ=37)
                                                      gATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGc                                                                              >  1:629354/1‑140 (MQ=38)
                                                      gATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGc                                                                              >  1:148857/1‑140 (MQ=38)
                                                         cAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGt                                                                           <  1:462268/140‑1 (MQ=37)
                                                           aGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCa                                                                         >  2:1181907/1‑140 (MQ=37)
                                                           aGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCATGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCa                                                                         >  2:911670/1‑140 (MQ=255)
                                                            gCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCag                                                                        >  1:80145/1‑140 (MQ=38)
                                                            gCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCag                                                                        >  1:1083203/1‑140 (MQ=37)
                                                            gCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCATGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCag                                                                        <  1:911670/140‑1 (MQ=255)
                                                              tGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCagag                                                                      <  2:460605/140‑1 (MQ=37)
                                                              tGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCagag                                                                      <  2:561450/140‑1 (MQ=37)
                                                              tGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCagag                                                                      <  1:686119/140‑1 (MQ=37)
                                                              tGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCagag                                                                      <  1:294253/140‑1 (MQ=37)
                                                              tGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCagag                                                                      <  1:820549/140‑1 (MQ=37)
                                                               gAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAgg                                                                     <  1:1246913/140‑1 (MQ=37)
                                                                    ttGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATg                                                                <  1:399751/140‑1 (MQ=37)
                                                                       aaaCACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAg                                                             >  1:1155228/1‑140 (MQ=38)
                                                                        aaCACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAgg                                                            <  1:445729/140‑1 (MQ=37)
                                                                        aaCACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAgg                                                            <  1:796189/140‑1 (MQ=37)
                                                                        aaCACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAgg                                                            <  2:629354/140‑1 (MQ=37)
                                                                        aaCACTGAACAATGAAAGTTGTACGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAgg                                                            <  1:1035400/140‑1 (MQ=255)
                                                                            cTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGt                                                        >  2:716892/1‑140 (MQ=37)
                                                                             tGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTg                                                       >  1:318561/1‑140 (MQ=38)
                                                                              gAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGc                                                      >  2:184452/1‑140 (MQ=255)
                                                                               aaCAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCt                                                     >  1:853797/1‑140 (MQ=255)
                                                                                    tGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCt                                                >  2:791601/1‑140 (MQ=37)
                                                                                    tGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCt                                                >  1:1126651/1‑140 (MQ=25)
                                                                                         gttgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGAt                                           <  1:752088/140‑1 (MQ=21)
                                                                                         gttgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGAt                                           <  2:148857/140‑1 (MQ=21)
                                                                                         gttgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGAt                                           <  2:318561/140‑1 (MQ=21)
                                                                                            gttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAg                                        <  2:659145/140‑1 (MQ=21)
                                                                                            gttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAg                                        <  1:580909/140‑1 (MQ=21)
                                                                                            gttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAg                                        <  2:1152399/140‑1 (MQ=21)
                                                                                             ttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGc                                       >  2:407616/1‑140 (MQ=25)
                                                                                              tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCg                                      >  2:438625/1‑140 (MQ=21)
                                                                                              tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCg                                      >  2:620447/1‑140 (MQ=37)
                                                                                               cGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGt                                     <  1:1009972/140‑1 (MQ=21)
                                                                                                  gAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCgg                                  <  2:853797/140‑1 (MQ=21)
                                                                                                  gAGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCgg                                  <  1:407616/140‑1 (MQ=21)
                                                                                                   aGTCTCTCAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGt                                 <  1:906758/140‑1 (MQ=21)
                                                                                                     tctctcAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTaa                               >  2:11700/1‑140 (MQ=25)
                                                                                                      ctctcAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAg                              <  2:159073/140‑1 (MQ=21)
                                                                                                      ctctcAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAg                              <  2:80145/140‑1 (MQ=21)
                                                                                                        ctcAAATTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGt                            <  1:419914/140‑1 (MQ=21)
                                                                                                           aaaTTTTCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGat                         <  1:184452/140‑1 (MQ=21)
                                                                                                                ttCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGaa                    <  1:1181907/140‑1 (MQ=21)
                                                                                                                 tCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAAc                   >  2:420339/1‑140 (MQ=37)
                                                                                                                 tCGCAACACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAAc                   >  1:737457/1‑140 (MQ=25)
                                                                                                                     aaCACGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGtt               <  1:741451/140‑1 (MQ=21)
                                                                                                                         cGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATaa           <  1:177900/140‑1 (MQ=21)
                                                                                                                         cGATGATGGATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATaa           <  1:1024201/140‑1 (MQ=21)
                                                                                                                                 gATCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGAt   >  2:385532/1‑140 (MQ=17)
                                                                                                                                  aTCACAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGAtt  >  2:448971/1‑140 (MQ=14)
                                                                                                                                     |                                                                                                                                        
CTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATT  >  NC_000913/225602‑225871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A