Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F48 I1 R1 66 101.5 3442112 98.9% 3404248 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 250,252 C→A pseudogene (181/756 nt) lafU → flagellar system protein, promoterless fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913250,2520CA100.0% 276.3 / NA 79pseudogene (181/756 nt)lafUflagellar system protein, promoterless fragment
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (36/43);  total (36/43)

GCAGTCGATTTTTAACGGTGGTGGGCTGTCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTGCTGATTAAAGACGAC  >  NC_000913/250116‑250386
                                                                                                                                        |                                                                                                                                      
gCAGTCGATTTTTAACGGTGGTGGGCTGTCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCtgatga                                                                                                                                     <  1:28870/140‑1 (MQ=255)
     cGATTTTTAACGGTGGTGGGCTGTCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATgaagaag                                                                                                                                >  1:109362/1‑140 (MQ=255)
          tttAACGGTGGTGGGCTGTCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATc                                                                                                                           >  1:394599/1‑140 (MQ=255)
                ggtggtGGGCTGTCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCAc                                                                                                                     <  1:1256219/140‑1 (MQ=255)
                ggtggtGGGCTGTCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCAc                                                                                                                     <  2:343889/140‑1 (MQ=255)
                 gtggtgGGCTGTCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCAcc                                                                                                                    >  2:1374388/1‑140 (MQ=255)
                          tGTCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGt                                                                                                           <  1:278034/140‑1 (MQ=255)
                           gTCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTg                                                                                                          <  1:31191/140‑1 (MQ=255)
                            tCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGa                                                                                                         >  1:535608/1‑140 (MQ=255)
                            tCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGa                                                                                                         >  2:1466696/1‑140 (MQ=255)
                            tCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGa                                                                                                         >  1:210532/1‑140 (MQ=255)
                            tCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGa                                                                                                         >  1:451308/1‑140 (MQ=255)
                            tCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGa                                                                                                         >  1:237214/1‑140 (MQ=255)
                            tCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGa                                                                                                         >  1:913986/1‑140 (MQ=255)
                            tCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGa                                                                                                         >  2:1427681/1‑140 (MQ=255)
                            tCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGa                                                                                                         >  1:1133849/1‑140 (MQ=255)
                               ccGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCt                                                                                                      <  1:317837/140‑1 (MQ=255)
                               ccGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTCATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCt                                                                                                      >  1:897626/1‑140 (MQ=255)
                                  ttAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc                                                                                                   <  1:1303965/140‑1 (MQ=255)
                                    aaataaaATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCaa                                                                                                 <  1:1543870/140‑1 (MQ=255)
                                    aaataaaATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCaa                                                                                                 <  2:368202/140‑1 (MQ=255)
                                    aaataaaATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCaa                                                                                                 <  1:776486/140‑1 (MQ=255)
                                     aataaaATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAAc                                                                                                <  2:590802/140‑1 (MQ=255)
                                     aataaaATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAAc                                                                                                <  1:1467047/140‑1 (MQ=255)
                                     aataaaATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTCATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAAc                                                                                                <  2:897626/140‑1 (MQ=255)
                                      ataaaATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAAcc                                                                                               <  1:1671857/140‑1 (MQ=255)
                                      ataaaATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAAcc                                                                                               <  1:1374388/140‑1 (MQ=255)
                                      ataaaATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAAc                                                                                                >  1:770087/1‑139 (MQ=255)
                                      ataaaATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAAc                                                                                                <  2:770087/139‑1 (MQ=255)
                                         aaaTCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGt                                                                                            <  1:1466696/140‑1 (MQ=255)
                                            tCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAATGGCGCTGATGAAGAAGAAAACCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATc                                                                                         >  2:1457737/1‑140 (MQ=255)
                                               gCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGt                                                                                            >  2:1035829/1‑134 (MQ=255)
                                               gCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGt                                                                                            <  1:1035829/134‑1 (MQ=255)
                                               gCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAac                                                                                      <  2:237214/140‑1 (MQ=255)
                                               gCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGCGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGAATCAac                                                                                      >  1:644533/1‑140 (MQ=255)
                                                cccGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAaca                                                                                     >  1:919988/1‑140 (MQ=255)
                                                cccGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAaca                                                                                     >  2:834744/1‑140 (MQ=255)
                                                 ccGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAacac                                                                                    >  2:304390/1‑140 (MQ=255)
                                                        aTCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGcc                                                                             >  2:1036750/1‑140 (MQ=255)
                                                             ccAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGa                                                                        <  1:1036750/140‑1 (MQ=255)
                                                              cAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGAt                                                                       <  1:1427681/140‑1 (MQ=255)
                                                              cAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGAt                                                                       <  1:304390/140‑1 (MQ=255)
                                                                aaaCCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATgc                                                                     <  1:1457737/140‑1 (MQ=255)
                                                                      gCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCatat                                                               >  2:208653/1‑140 (MQ=255)
                                                                           cGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAg                                                          <  2:1320248/140‑1 (MQ=255)
                                                                           cGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAg                                                          <  1:208653/140‑1 (MQ=255)
                                                                           cGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATACGGAAg                                                          <  2:343769/140‑1 (MQ=255)
                                                                             tGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCg                                                        >  2:588778/1‑140 (MQ=255)
                                                                                 ggTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATc                                                    <  1:1563608/140‑1 (MQ=255)
                                                                                   tGCCGGAAGAGACGGAGGAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCtg                                                  >  2:1266115/1‑140 (MQ=255)
                                                                                   tGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCtg                                                  <  2:535608/140‑1 (MQ=255)
                                                                                    gCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCtgg                                                 >  2:1572182/1‑140 (MQ=255)
                                                                                     ccGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAACCGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCtgga                                                <  2:873509/140‑1 (MQ=255)
                                                                                     ccGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCtgga                                                <  1:1567207/140‑1 (MQ=255)
                                                                                        gAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCtggagat                                             <  2:913986/140‑1 (MQ=255)
                                                                                        gAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCtggagat                                             >  2:456208/1‑140 (MQ=255)
                                                                                         aaGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCtggagatg                                            >  1:633118/1‑140 (MQ=255)
                                                                                             gaCGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCtggagatggaga                                        >  1:284840/1‑140 (MQ=255)
                                                                                             gaCGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCtggagatggaga                                        <  2:284840/140‑1 (MQ=255)
                                                                                              aCGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTggagatggagat                                       >  2:529136/1‑140 (MQ=255)
                                                                                               cGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGAtt                                      >  1:420415/1‑140 (MQ=255)
                                                                                                ggAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTg                                     <  1:1572182/140‑1 (MQ=255)
                                                                                                 gagaAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGt                                    <  1:456208/140‑1 (MQ=255)
                                                                                                   gaAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCGTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAATCGAATCTGGAGATGGAGATTGTTc                                  >  1:548887/1‑140 (MQ=255)
                                                                                                     aaaaaGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTccc                                <  2:668872/140‑1 (MQ=255)
                                                                                                     aaaaaGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTccc                                <  1:709623/140‑1 (MQ=255)
                                                                                                     aaaaaGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTccc                                <  1:1266115/140‑1 (MQ=255)
                                                                                                     aaaaaGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTccc                                <  1:852164/140‑1 (MQ=255)
                                                                                                      aaaaGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTcccc                               <  1:1483564/140‑1 (MQ=255)
                                                                                                        aaGCGCGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAg                             >  1:383331/1‑140 (MQ=255)
                                                                                                          gcgcGTGATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAggg                           >  2:632770/1‑140 (MQ=255)
                                                                                                                gATGTGAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTAcg                     <  2:451308/140‑1 (MQ=255)
                                                                                                                    tgAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTg                 <  1:1496680/140‑1 (MQ=255)
                                                                                                                    tgAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTg                 <  2:548887/140‑1 (MQ=255)
                                                                                                                    tgAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTg                 <  2:210532/140‑1 (MQ=255)
                                                                                                                     gAATGAGAAAACGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTgt                >  2:883001/1‑139 (MQ=255)
                                                                                                                            aaaaCGGCGCTGAAGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTGCTGATTaa         >  2:411591/1‑140 (MQ=255)
                                                                                                                                cGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTGCTGATTAAAgac     >  1:651195/1‑140 (MQ=255)
                                                                                                                                cGGCGCTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTGCTGATTAAAgac     >  2:1646213/1‑140 (MQ=255)
                                                                                                                                   cgcTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTGCTGATTAAAgacgac  >  1:581196/1‑140 (MQ=255)
                                                                                                                                   cgcTGATGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTGCTGATTAAAgacgac  <  2:919988/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
GCAGTCGATTTTTAACGGTGGTGGGCTGTCGCCGTTAAATAAAATCAGCCCGTCTCATCCGCCAAAACCTGCCACCGTGGCGGTGCCGGAAGAGACGGAGAAAAAAGCGCGTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGCAACCAGTATCAACACCATTGCCCGTGATGCGCATATGGAAGCGAATCTGGAGATGGAGATTGTTCCCCAGGGATTACGCGTGCTGATTAAAGACGAC  >  NC_000913/250116‑250386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A