Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F48 I1 R1 83 81.6 2760494 99.1% 2735649 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 473,589 G→T V208V (GTG→GTT)  amtB → ammonia/ammonium transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913473,5890GT100.0% 249.6 / NA 70V208V (GTG→GTT) amtBammonia/ammonium transporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (33/37);  total (33/37)

ATTCCGATTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTGGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATGAAATCGCGGCACTGGCATT  >  NC_000913/473452‑473723
                                                                                                                                         |                                                                                                                                      
aTTCCGATTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTggg                                                                                                                                      <  1:392602/140‑1 (MQ=255)
 ttCCGATTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGc                                                                                                                                     <  2:1224259/140‑1 (MQ=255)
 ttCCGATTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGc                                                                                                                                     <  1:345947/140‑1 (MQ=255)
  tCCGATTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCt                                                                                                                                    >  1:615523/1‑140 (MQ=255)
  tCCGATTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCt                                                                                                                                    >  2:617931/1‑140 (MQ=255)
  tCCGATTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCt                                                                                                                                    >  2:823272/1‑140 (MQ=255)
    cGATTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTc                                                                                                                                  >  2:658985/1‑140 (MQ=255)
    cGATTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTc                                                                                                                                  >  2:911449/1‑140 (MQ=255)
      aTTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCgg                                                                                                                                >  1:43756/1‑140 (MQ=255)
          cgcATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGTTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTaaa                                                                                                                            >  1:284811/1‑140 (MQ=255)
          cgcATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTaaa                                                                                                                            >  1:129725/1‑140 (MQ=255)
          cgcATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTaaa                                                                                                                            >  1:791380/1‑140 (MQ=255)
                 ggTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGt                                                                                                                     <  2:241732/140‑1 (MQ=255)
                   tgtgGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGttt                                                                                                                   >  2:322881/1‑140 (MQ=255)
                     tgGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTaa                                                                                                                 >  2:348299/1‑140 (MQ=255)
                          cGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGc                                                                                                            >  2:319511/1‑140 (MQ=255)
                             tggtTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGcaca                                                                                                         >  2:217976/1‑140 (MQ=255)
                             tggtTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGcaca                                                                                                         >  2:139889/1‑140 (MQ=255)
                             tggtTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGcaca                                                                                                         >  1:142454/1‑140 (MQ=255)
                             tggtTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGcaca                                                                                                         >  1:292859/1‑140 (MQ=255)
                                     tGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCg                                                                                                 <  1:393176/140‑1 (MQ=255)
                                      ggCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGa                                                                                                <  2:1190730/140‑1 (MQ=255)
                                      ggCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGa                                                                                                <  2:407571/140‑1 (MQ=255)
                                         ttCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATgg                                                                                             <  1:265703/140‑1 (MQ=255)
                                           ctcACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTc                                                                                           <  1:139889/140‑1 (MQ=255)
                                           ctcACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTc                                                                                           <  2:292859/140‑1 (MQ=255)
                                                     gcTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGa                                                                                 >  1:208395/1‑140 (MQ=255)
                                                      cTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGAc                                                                                >  1:269196/1‑140 (MQ=255)
                                                      cTGGATTTCGCGGGTGACACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACC‑CACAACCTGCCGATGGTCTTCACCGGGACt                                                                               >  2:739719/1‑140 (MQ=255)
                                                      cTGGATATCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAGTCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGAc                                                                                <  2:940331/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGTTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  2:284811/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  1:479897/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  2:26357/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  2:122210/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  1:102733/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  1:658985/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  1:824016/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGCACCGTGGTGCACAATAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  1:857570/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGCACCGTGGTCCACATTAACGCCGAAATCGCCCGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  2:1379391/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGCACAGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  2:1001304/140‑1 (MQ=255)
                                                          aTTTCGCGGGTGGAACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGcc                                                                            <  1:348299/140‑1 (MQ=255)
                                                           tttCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCa                                                                           <  1:617931/140‑1 (MQ=255)
                                                           tttCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCa                                                                           <  2:196809/140‑1 (MQ=255)
                                                             tCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATGGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCAtt                                                                         <  1:911738/140‑1 (MQ=255)
                                                              cgcgGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATtc                                                                        >  1:993960/1‑140 (MQ=255)
                                                              cgcgGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATtc                                                                        >  1:252700/1‑140 (MQ=255)
                                                              cgcgGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATtc                                                                        <  2:362731/140‑1 (MQ=255)
                                                                   gTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCtat                                                                   >  1:692261/1‑140 (MQ=255)
                                                                      gCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATc                                                                >  2:1054840/1‑140 (MQ=255)
                                                                       cACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCTCCGGGACTGCCATTCTCTATATCg                                                               <  1:823272/140‑1 (MQ=255)
                                                                        aCCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCgg                                                              <  2:615523/140‑1 (MQ=255)
                                                                             ggtgCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCggttggt                                                         >  1:622025/1‑140 (MQ=255)
                                                                              gtgCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCggttggtt                                                        <  1:769477/140‑1 (MQ=255)
                                                                                 cacaTTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTgg                                                     >  2:987121/1‑140 (MQ=255)
                                                                                     ttAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCttt                                                 <  2:1059285/140‑1 (MQ=255)
                                                                                      tAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTa                                                >  1:902052/1‑140 (MQ=255)
                                                                                      tAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTa                                                >  2:997314/1‑140 (MQ=255)
                                                                                      tAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTa                                                >  1:457759/1‑140 (MQ=255)
                                                                                         cgccgcAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACg                                             >  1:368677/1‑140 (MQ=255)
                                                                                                     cGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACC‑CACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCggg                                <  1:739719/140‑1 (MQ=255)
                                                                                                          tggtggGCGTGTATAAGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACg                            <  1:609982/140‑1 (MQ=255)
                                                                                                            gtggGCGCGTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGc                          >  2:304094/1‑140 (MQ=255)
                                                                                                                 cgcgTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAAtt                     >  2:468575/1‑139 (MQ=255)
                                                                                                                 cgcgTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATg                     >  2:909873/1‑140 (MQ=255)
                                                                                                                    gTATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATGaaa                  >  2:1248517/1‑140 (MQ=255)
                                                                                                                     tATCTGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATGAAAt                 <  1:448618/140‑1 (MQ=255)
                                                                                                                         tGATAGGAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATGAAATcgcg             <  1:1248517/140‑1 (MQ=255)
                                                                                                                              ggAAAACGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATGAAATCGCGGCACt        <  1:443200/140‑1 (MQ=255)
                                                                                                                                aaaaCGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATGAAATCGCGGCACTgg      <  1:217976/140‑1 (MQ=255)
                                                                                                                                aaaaCGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGAGAATGAAATCGCGGCACTgg      <  2:208395/140‑1 (MQ=255)
                                                                                                                                  aaCGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATGAAATCGCGGCACTGGCa    <  2:30942/140‑1 (MQ=255)
                                                                                                                                  aaCGCGTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATGAAATCGCGGCACTGGCa    >  1:30942/1‑140 (MQ=255)
                                                                                                                                    cgcgTTGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATGAAATCGCGGCACTGGCAtt  <  1:863522/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
ATTCCGATTGCGCATATGGTGTGGGGCGGTGGTTTGCTGGCTTCTCACGGTGCGCTGGATTTCGCGGGTGGCACCGTGGTGCACATTAACGCCGCAATCGCCGGTCTGGTGGGCGCGTATCTGATAGGAAAACGCGTGGGCTTCGGTAAAGAGGCGTTTAAACCGCACAACCTGCCGATGGTCTTCACCGGGACTGCCATTCTCTATATCGGTTGGTTTGGCTTTAACGCCGGGTCAGCGGGCACGGCGAATGAAATCGCGGCACTGGCATT  >  NC_000913/473452‑473723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A