Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F48 I1 R1	82	50.4	1709896	99.0%	1692797	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	357,088	C→A	G306G (GGC→GGA)	codA →	cytosine/isoguanine deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	357,088	0	C	A	100.0%	259.2 / NA	72	G306G (GGC→GGA)	codA	cytosine/isoguanine deaminase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (36/36); total (36/36)

GCCTGTTCCGCTTGCTGAAAATGTCCGGTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGA  >  NC_000913/356952‑357224

gCCTGTTCCGCTTGCTGAAAATGTCCGGTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAAtt                                                                                                                                       <  1:82382/140‑1 (MQ=255)

gCCTGTTCCGCTTGCTGAAAATGTCCGGTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAAtt                                                                                                                                       <  1:835611/140‑1 (MQ=255)

     ttCCGCTTGCTGAAAATGTCCGGTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGt                                                                                                                                  >  2:74354/1‑140 (MQ=255)

          cTTGCTGAAAATGTCCGGTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGTTGGAGTCCGGAATTAACGTCTGCt                                                                                                                             >  2:774825/1‑140 (MQ=255)

            tGCTGAAAATGTCCGGTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCttt                                                                                                                           >  2:437344/1‑140 (MQ=255)

               tGAAAATGTCCGGTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGTTGGAGTCCGGAATTAACGTCTGCTTTGGt                                                                                                                        <  1:774825/140‑1 (MQ=255)

                       tCCGGTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACgatga                                                                                                                <  2:578174/140‑1 (MQ=255)

                         cGGTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGatgatg                                                                                                              <  1:708468/140‑1 (MQ=255)

                           gTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTc                                                                                                            >  1:280652/1‑140 (MQ=255)

                            tATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCt                                                                                                           <  1:437344/140‑1 (MQ=255)

                                      gTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTg                                                                                                 >  1:250215/1‑140 (MQ=255)

                                      gTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTg                                                                                                 >  1:413163/1‑140 (MQ=255)

                                      gTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTg                                                                                                 >  1:652509/1‑140 (MQ=255)

                                      gTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTg                                                                                                 >  2:10881/1‑140 (MQ=255)

                                             aCCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATATGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCg                                                                                          >  2:446491/1‑140 (MQ=255)

                                                  cTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTggg                                                                                     <  1:41232/140‑1 (MQ=255)

                                                   tGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGa                                                                                    <  1:510142/140‑1 (MQ=255)

                                                        aaTATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGc                                                                               >  1:151698/1‑140 (MQ=255)

                                                         atatTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCg                                                                              <  1:123557/140‑1 (MQ=255)

                                                          tatTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGTTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGa                                                                             <  2:285947/140‑1 (MQ=255)

                                                           atTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGaa                                                                            <  2:727182/140‑1 (MQ=255)

                                                               aTCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAatatt                                                                        >  2:317365/1‑139 (MQ=255)

                                                               aTCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATAtg                                                                        >  1:474776/1‑140 (MQ=255)

                                                               aTCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATAtg                                                                        >  2:823746/1‑140 (MQ=255)

                                                                    cAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCa                                                                   >  2:548132/1‑140 (MQ=255)

                                                                    cAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCa                                                                   >  1:742055/1‑140 (MQ=255)

                                                                    cAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCa                                                                   >  1:396247/1‑140 (MQ=255)

                                                                    cAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCa                                                                   >  1:75726/1‑140 (MQ=255)

                                                                    cAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCa                                                                   >  1:208456/1‑140 (MQ=255)

                                                                      aGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAg                                                                 >  1:506041/1‑140 (MQ=255)

                                                                      aGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAg                                                                 <  2:622183/140‑1 (MQ=255)

                                                                       ggACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGt                                                                >  1:472373/1‑140 (MQ=255)

                                                                         aCGTTTCGATACGTATCCAAAACGTCGCTGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGtgc                                                              >  1:610970/1‑140 (MQ=255)

                                                                          cGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGtgct                                                             <  2:489187/140‑1 (MQ=255)

                                                                            tttCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGtgctgc                                                           >  2:231980/1‑140 (MQ=255)

                                                                               cGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCata                                                        <  2:456366/140‑1 (MQ=255)

                                                                                      tATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCt                                                 <  1:495509/140‑1 (MQ=255)

                                                                                        tCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGc                                               >  2:384386/1‑140 (MQ=255)

                                                                                        tCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGc                                               >  1:485853/1‑140 (MQ=255)

                                                                                         ccAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCa                                              <  1:10881/140‑1 (MQ=255)

                                                                                         ccAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCa                                              <  1:494706/140‑1 (MQ=255)

                                                                                            aaaCGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGt                                           >  2:28601/1‑140 (MQ=255)

                                                                                                gTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGc                                       <  2:250215/140‑1 (MQ=255)

                                                                                                  cgcgGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCa                                     >  2:460729/1‑140 (MQ=255)

                                                                                                  cgcgGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCa                                     >  2:47211/1‑140 (MQ=255)

                                                                                                  cgcgGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCa                                     >  1:845286/1‑140 (MQ=255)

                                                                                                  cgcgGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCa                                     >  1:318392/1‑140 (MQ=255)

                                                                                                       cATCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGa                                <  1:384386/140‑1 (MQ=255)

                                                                                                        aTCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGAt                               <  1:74354/140‑1 (MQ=255)

                                                                                                        aTCACGCGCGTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGAt                               <  1:823746/140‑1 (MQ=255)

                                                                                                             gcgcgTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCt                          <  2:845286/140‑1 (MQ=255)

                                                                                                             gcgcgTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCt                          <  1:818779/140‑1 (MQ=255)

                                                                                                                 gTTAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACgg                      <  2:413163/140‑1 (MQ=255)

                                                                                                                  ttAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACggg                     <  2:506041/140‑1 (MQ=255)

                                                                                                                  ttAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACggg                     <  1:566328/140‑1 (MQ=255)

                                                                                                                  ttAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACggg                     <  2:280652/140‑1 (MQ=255)

                                                                                                                  ttAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACggg                     <  2:472373/140‑1 (MQ=255)

                                                                                                                  ttAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACggg                     <  2:237329/140‑1 (MQ=255)

                                                                                                                   tAAAGAGATGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGc                    <  2:742055/140‑1 (MQ=255)

                                                                                                                           tGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAAc            >  1:97348/1‑140 (MQ=255)

                                                                                                                           tGCTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAAc            >  1:475784/1‑140 (MQ=255)

                                                                                                                             cTGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGa          >  1:672133/1‑140 (MQ=255)

                                                                                                                              tGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGAt         <  2:485853/140‑1 (MQ=255)

                                                                                                                              tGGAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGAt         <  2:208456/140‑1 (MQ=255)

                                                                                                                               ggAGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATg        >  2:824936/1‑140 (MQ=255)

                                                                                                                                 aGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGc      <  1:317365/140‑1 (MQ=255)

                                                                                                                                 aGTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGc      <  2:318392/140‑1 (MQ=255)

                                                                                                                                  gTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGcc     <  2:652509/140‑1 (MQ=255)

                                                                                                                                  gTCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGcc     >  1:410698/1‑140 (MQ=255)

                                                                                                                                   tCCGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCt    <  2:610970/140‑1 (MQ=255)

                                                                                                                                     cGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCTTATGGGGCTGCATGTTTGCCAGTTGATGGGCGACGGGCAGATTAACGATGGCCTGa  >  1:833081/1‑140 (MQ=255)

                                                                                                                                     cGGAATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGa  >  2:373206/1‑140 (MQ=255)

GCCTGTTCCGCTTGCTGAAAATGTCCGGTATTAACTTTGTCGCCAACCCGCTGGTCAATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAGTCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGA  >  NC_000913/356952‑357224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A