Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F48 I1 R1
|
79 |
90.7 |
3162666 |
99.0% |
3131039 |
139.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
707,343 |
G→T |
V417V (GTG→GTT) |
glnS → |
glutamine‑‑tRNA ligase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 707,343 | 0 | G | T | 100.0%
| 212.3
/ NA
| 60 | V417V (GTG→GTT) | glnS | glutamine‑‑tRNA ligase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (26/34); total (26/34) |
AACCGGAAATGGGCAGCCGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTGATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGTTATTCACTGGGTGAGCG > NC_000913/707207‑707476
|
aaCCGGAAATGGGCAGCCGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTAtt > 1:697683/1‑140 (MQ=255)
aaCCGGAAATGGGCAGCCGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTAtt < 2:1255624/140‑1 (MQ=255)
cGGAAATGGGCAGCCGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAg > 2:324646/1‑140 (MQ=255)
cGGAAATGGGCAGCCGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAg > 1:1548373/1‑140 (MQ=255)
tGGGCAGCCGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCAGCGTAATGCTTATGTTATTAAGGCAGaa < 1:1131542/140‑1 (MQ=255)
ggCAGCCGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAAcg > 1:1155092/1‑140 (MQ=255)
gCCGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTc > 2:430885/1‑140 (MQ=255)
gCCGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTc > 1:1491265/1‑140 (MQ=255)
ccGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCg > 2:725178/1‑140 (MQ=255)
tCAGGGGCCGTTTAGCGGAGAGGTTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAGAGAAGTGCGTCTGCGTAATGTTTATGTTATTAAGGCAGAACGCGTCgaga > 2:1429739/1‑140 (MQ=255)
cGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGcc < 1:985219/140‑1 (MQ=255)
gTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCg < 2:686399/140‑1 (MQ=255)
tttAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGa > 2:467131/1‑140 (MQ=255)
gTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAat > 2:1051837/1‑140 (MQ=255)
gagaTTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAatat < 2:411894/140‑1 (MQ=255)
gagaTTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAatat < 2:1548373/140‑1 (MQ=255)
agaTTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATc > 2:333880/1‑140 (MQ=255)
ggATTGATCGCGTCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCaccacc < 2:1236568/140‑1 (MQ=255)
ggATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCaccacc < 2:1155092/140‑1 (MQ=255)
ggAATGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGACAGATGCCGAAGGTAATATCaccgcc < 2:1449094/140‑1 (MQ=255)
gATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCAccacca < 2:900277/140‑1 (MQ=255)
gATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCAtctt < 2:666498/140‑1 (MQ=255)
aTCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCAtcttt > 2:1365885/1‑139 (MQ=255)
aTCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCAtcttc > 2:1117882/1‑140 (MQ=255)
gcCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTat > 2:702601/1‑139 (MQ=255)
gcCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTat > 2:416349/1‑139 (MQ=255)
gcCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTAc > 2:1177638/1‑140 (MQ=255)
aTTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTAt < 1:725178/140‑1 (MQ=255)
aTTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTAGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTAt < 2:704722/140‑1 (MQ=255)
ttCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGa < 1:74169/140‑1 (MQ=255)
tCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGAc < 1:1228167/140‑1 (MQ=255)
cgAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCg < 1:1051837/140‑1 (MQ=255)
gaagaaGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGa < 2:144833/140‑1 (MQ=255)
aagaagCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGAt < 1:1488331/140‑1 (MQ=255)
aagaagCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGAt < 1:333880/140‑1 (MQ=255)
aagCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATAcc < 2:1029741/140‑1 (MQ=255)
tACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATcc > 2:1109221/1‑140 (MQ=255)
cAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCgg > 1:1560925/1‑140 (MQ=255)
gTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGAt < 1:1117882/140‑1 (MQ=255)
tCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATg > 2:716557/1‑140 (MQ=255)
tGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGt > 2:1217740/1‑140 (MQ=255)
tGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGt > 1:1208102/1‑140 (MQ=255)
gTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTct > 2:1264770/1‑139 (MQ=255)
tGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGt < 2:735628/140‑1 (MQ=255)
tGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGt < 1:429916/140‑1 (MQ=255)
gggTAAAGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAg > 1:714823/1‑140 (MQ=255)
aaaGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCaa < 1:220221/140‑1 (MQ=255)
aaaGAAGTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCaa < 2:1023804/140‑1 (MQ=255)
agaagTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTGCTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAg < 1:1074988/140‑1 (MQ=255)
agaagTGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAg < 1:430885/140‑1 (MQ=255)
tGCGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGtt > 1:1486258/1‑140 (MQ=255)
cGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGgtgt > 1:530624/1‑137 (MQ=255)
cGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGgtgt < 2:530624/137‑1 (MQ=255)
cGTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGTTAt > 2:473069/1‑140 (MQ=255)
gTCTGCGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGTTAtt < 2:328978/140‑1 (MQ=255)
cGTAATGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGTTATTCACTg > 2:1228255/1‑140 (MQ=255)
gaTGCTTATGTTATTAAGGCAGAACGCGGCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGCTACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGTTATTCACTGGGt < 2:1486511/139‑1 (MQ=255)
aaTGCTTATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGTTATTCACTGGGt < 1:651417/140‑1 (MQ=255)
ttATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGTTATTCACTGGGTGAgcg < 2:1486258/140‑1 (MQ=255)
ttATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGTTATTCACTGGGTGAgcg < 1:416349/140‑1 (MQ=255)
ttATGTTATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGTTATTCACTGGGTGAgcg < 1:716557/140‑1 (MQ=255)
|
AACCGGAAATGGGCAGCCGTCAGGTGCCGTTTAGCGGTGAGATTTGGATTGATCGCGCCGATTTCCGCGAAGAAGCTAACAAGCAGTACAAACGTCTGGTGCTGGGTAAAGAAGTGCGTCTGCGTAATGCTTATGTGATTAAGGCAGAACGCGTCGAGAAAGATGCCGAAGGTAATATCACCACCATCTTCTGTACTTATGACGCCGATACCTTAAGCAAAGATCCGGCAGATGGTCGTAAAGTCAAAGGTGTTATTCACTGGGTGAGCG > NC_000913/707207‑707476
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A