Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F48 I1 R1 70 151.6 5072932 98.7% 5006983 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 299,095 C→A G614* (GGA→TGA)  paoC ← aldehyde dehydrogenase: molybdenum cofactor‑binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913299,0950CA100.0% 450.4 / NA 126G614* (GGA→TGA) paoCaldehyde dehydrogenase: molybdenum cofactor‑binding subunit
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (72/54);  total (72/54)

Only 100 of 127 total aligned reads displayed.

ATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTCAGTGTTCCGAATTCAATGCTCT  >  NC_000913/298958‑299226
                                                                                                                                         |                                                                                                                                   
accccccGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATg                                                                                                                                   <  2:376769/137‑1 (MQ=255)
 tACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATgc                                                                                                                                  <  2:681263/140‑1 (MQ=255)
 tACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATgc                                                                                                                                  <  1:1739060/140‑1 (MQ=255)
     ccGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATgcagca                                                                                                                              <  1:2114106/140‑1 (MQ=255)
       gCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATTCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGcaca                                                                                                                            >  2:2172443/1‑140 (MQ=255)
       gCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGcaca                                                                                                                            >  2:903847/1‑140 (MQ=255)
       gCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGcaca                                                                                                                            >  2:2325268/1‑140 (MQ=255)
       gCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGcaca                                                                                                                            >  2:1190301/1‑140 (MQ=255)
       gCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGcaca                                                                                                                            >  1:568834/1‑140 (MQ=255)
        ccATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGcacac                                                                                                                           <  2:1136432/140‑1 (MQ=255)
            atCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAg                                                                                                                       >  1:215120/1‑140 (MQ=255)
              cGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCg                                                                                                                     >  2:1350387/1‑140 (MQ=255)
                tGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAg                                                                                                                   >  2:1199635/1‑140 (MQ=255)
                tGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAg                                                                                                                   >  1:1686238/1‑140 (MQ=255)
                tGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAg                                                                                                                   >  2:872187/1‑140 (MQ=255)
                       cGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGc                                                                                                            >  2:1323791/1‑140 (MQ=255)
                       cGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGc                                                                                                            >  1:1824834/1‑140 (MQ=255)
                       cGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGc                                                                                                            >  2:1691535/1‑140 (MQ=255)
                         aaGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCg                                                                                                          >  2:1898661/1‑140 (MQ=255)
                             aGCCCAACCGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGAcc                                                                                                      <  2:1392960/140‑1 (MQ=255)
                             aGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGAcc                                                                                                      >  2:877930/1‑140 (MQ=255)
                               cccAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCg                                                                                                    >  1:2175439/1‑140 (MQ=255)
                                ccAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGa                                                                                                   >  1:689751/1‑140 (MQ=255)
                                ccAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGa                                                                                                   >  1:2191989/1‑140 (MQ=255)
                                       gTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTtctc                                                                                            <  2:50269/140‑1 (MQ=255)
                                         cATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTccc                                                                                          >  1:526946/1‑140 (MQ=255)
                                          aTCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCg                                                                                         >  2:2363066/1‑140 (MQ=255)
                                          aTCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCg                                                                                         <  2:1824834/140‑1 (MQ=255)
                                               ccGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTcgcg                                                                                    <  2:1626264/140‑1 (MQ=255)
                                                 gCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCt                                                                                  <  1:159694/140‑1 (MQ=255)
                                                  ccAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTa                                                                                 >  1:2059948/1‑140 (MQ=255)
                                                   cAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTAt                                                                                <  2:526946/140‑1 (MQ=255)
                                                     gCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGc                                                                              >  2:516070/1‑140 (MQ=255)
                                                      ctcctcCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCa                                                                             >  1:823520/1‑140 (MQ=255)
                                                      ctcctcCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCa                                                                             >  2:171967/1‑140 (MQ=255)
                                                      ctcctcCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCa                                                                             >  2:319744/1‑140 (MQ=255)
                                                      ctcctcCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCa                                                                             >  1:1124972/1‑140 (MQ=255)
                                                       tcctccATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCAc                                                                            >  1:1879612/1‑140 (MQ=255)
                                                             aTCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGAc                                                                      <  2:648444/140‑1 (MQ=255)
                                                             aTCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGAc                                                                      <  1:1559202/140‑1 (MQ=255)
                                                               cAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGACCTTCTCCCGTCGCGCTATGCACGCCGACCt                                                                    <  2:2191989/140‑1 (MQ=255)
                                                               cAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCt                                                                    <  2:689751/140‑1 (MQ=255)
                                                                 gTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTcc                                                                  >  1:1089164/1‑140 (MQ=255)
                                                                  tGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCca                                                                 >  1:2425396/1‑140 (MQ=255)
                                                                  tGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCca                                                                 >  1:1904017/1‑140 (MQ=255)
                                                                   gCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCcac                                                                >  1:142002/1‑140 (MQ=255)
                                                                   gCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCcac                                                                >  1:2456971/1‑140 (MQ=255)
                                                                     cgcgCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACaa                                                              >  1:1405966/1‑140 (MQ=255)
                                                                        gcccatgcccatAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAAt                                                           >  1:1182547/1‑140 (MQ=255)
                                                                         cccatgcccatAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATg                                                          >  1:1594686/1‑140 (MQ=255)
                                                                                    aGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAgt                                               >  2:230259/1‑139 (MQ=255)
                                                                                    aGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAgt                                               >  2:695770/1‑139 (MQ=255)
                                                                                    aGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAgg                                               >  1:1412374/1‑140 (MQ=255)
                                                                                    aGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAgg                                               >  1:330692/1‑140 (MQ=255)
                                                                                    aGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAgg                                               >  2:1536216/1‑140 (MQ=255)
                                                                                    aGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAgg                                               >  2:1470562/1‑140 (MQ=255)
                                                                                       cATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGtat                                            <  1:532441/140‑3 (MQ=255)
                                                                                        aTTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGa                                           >  1:1286868/1‑140 (MQ=255)
                                                                                        aTTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGa                                           >  1:12289/1‑140 (MQ=255)
                                                                                        aTTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGa                                           >  1:592989/1‑140 (MQ=255)
                                                                                        aTTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGa                                           <  2:568834/140‑1 (MQ=255)
                                                                                         ttGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc                                          <  1:2363066/140‑1 (MQ=255)
                                                                                         ttGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc                                          <  1:1199635/140‑1 (MQ=255)
                                                                                         ttGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc                                          <  2:1089164/140‑1 (MQ=255)
                                                                                         ttGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc                                          <  1:2085159/140‑1 (MQ=255)
                                                                                         ttGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc                                          <  1:872187/140‑1 (MQ=255)
                                                                                         ttGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc                                          <  2:1879612/140‑1 (MQ=255)
                                                                                         ttGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc                                          <  2:1286868/140‑1 (MQ=255)
                                                                                         ttGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc                                          <  1:695770/140‑1 (MQ=255)
                                                                                         ttGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc                                          <  2:12289/140‑1 (MQ=255)
                                                                                          tGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAct                                         >  2:2063684/1‑140 (MQ=255)
                                                                                          tGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAct                                         >  1:1398368/1‑140 (MQ=255)
                                                                                          tGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAct                                         >  1:1720277/1‑140 (MQ=255)
                                                                                          tGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAct                                         >  1:1258876/1‑140 (MQ=255)
                                                                                          tGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAct                                         >  1:332859/1‑140 (MQ=255)
                                                                                              ccAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGActgctg                                     >  2:557655/1‑140 (MQ=255)
                                                                                                aaTGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGt                                   <  1:1838931/140‑1 (MQ=255)
                                                                                                aaTGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGt                                   <  2:2110631/140‑1 (MQ=255)
                                                                                                   gACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTAct                                <  2:1412374/140‑1 (MQ=255)
                                                                                                     ccTGGATGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTCctct                              <  2:1224862/140‑1 (MQ=255)
                                                                                                         gCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGc                          >  2:1989049/1‑140 (MQ=255)
                                                                                                         gCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGc                          >  1:1174589/1‑140 (MQ=255)
                                                                                                         gCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGc                          <  1:2280434/140‑1 (MQ=255)
                                                                                                         gCTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTATCCCGTCGCGCTATGCACACCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGCTACTCtttcc                          >  2:1147234/1‑138 (MQ=255)
                                                                                                          cTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGTACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCt                         <  2:1495363/140‑1 (MQ=255)
                                                                                                          cTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCt                         <  1:234629/140‑1 (MQ=255)
                                                                                                          cTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCt                         <  2:142002/140‑1 (MQ=255)
                                                                                                          cTGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCt                         <  1:903847/140‑1 (MQ=255)
                                                                                                           tGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTc                        >  2:1546806/1‑140 (MQ=255)
                                                                                                           tGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTc                        <  2:1429758/140‑1 (MQ=255)
                                                                                                           tGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTc                        <  1:516070/140‑1 (MQ=255)
                                                                                                           tGCGCGCAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTc                        <  1:1691535/140‑1 (MQ=255)
                                                                                                            gcgcgcAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTCa                       <  2:215120/140‑1 (MQ=255)
                                                                                                              gcgcAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTCAgt                     >  1:2311006/1‑140 (MQ=255)
                                                                                                                gcAGTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTCAgtgt                   >  1:1843457/1‑140 (MQ=255)
                                                                                                                   gTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTTTGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTCAGTGTTcc                <  2:1696220/140‑1 (MQ=255)
                                                                                                                   gTTTTCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTCAGTGTTcc                <  2:2059948/140‑1 (MQ=255)
                                                                                                                      ttCGGATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTCAGTGTTCCGaa             <  1:877930/140‑1 (MQ=255)
                                                                                                                          gATTCAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTCAGTGTTCCGAATTCa         <  2:472858/140‑1 (MQ=255)
                                                                                                                              cAGGATGCGTCATGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTCAGTGTTCCGAATTCAATGc     >  2:2061801/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                   
ATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACACAGCGAGCATACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTACTCTTTGCTCAGTGTTCCGAATTCAATGCTCT  >  NC_000913/298958‑299226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A