Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
115 |
276.2 |
7960526 |
99.2% |
7896841 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
3,723,652 |
C→T |
L156L (CTG→TTG) |
U712_19195 → |
putative transporter ywcJ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 3,723,652 | 0 | C | T | 99.0%
| 1085.5
/ NA
| 303 | L156L (CTG→TTG) | U712_19195 | putative transporter ywcJ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (146/154); minor base A (3/0); total (149/154) |
| Fisher's exact test for biased strand distribution p-value = 1.18e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 303 total aligned reads displayed.
CTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGAACACAGCATTGCC > CP006881/3723505‑3723798
|
ttggggATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCACCCTGATCAGCGCGACGGGCCTTTTTGAGGAGCCTTCTGTCCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTg < 1:3934948/146‑1 (MQ=255)
tgtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGGGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTgg > 2:1314787/1‑149 (MQ=255)
ggggATGCCAACCCATGCCGGCAATTAAATCGGCGCCATTCTGTTTGCCATCCTGACCAGCGCGACGGGACTTTTTGAGGGGCCTTCTGTCCATTCCTTTTTGATCCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGtt < 2:2562530/148‑1 (MQ=255)
tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttt > 1:2795075/1‑150 (MQ=255)
ggATGTCAGGCTAGGCCGGCATTTTAACCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGCCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGtttt < 1:523731/150‑1 (MQ=255)
ggATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGtttt > 2:915883/1‑150 (MQ=255)
ggATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGtttt > 1:2386001/1‑150 (MQ=255)
ggATGACAAGCTATGCCGGCATTTTAACGGGCGCCTTTCTGTTTCCCATCCTGACCAGCGCGAGGGGTCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGtttt < 1:3098663/150‑1 (MQ=255)
aTGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGGGCCGCCGGCTTCCGAATTGTTTTTc > 1:31442/1‑150 (MQ=255)
cAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGCCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCagag < 1:2060874/150‑1 (MQ=255)
cAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCagag > 2:2655375/1‑150 (MQ=255)
aaGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgg > 1:1944002/1‑150 (MQ=255)
aGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAggg > 2:2545470/1‑150 (MQ=255)
tGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAGATGGAGCCGCCAGCTTCCGAATTGTATGTCCGAGGAAAGCt > 1:681438/1‑150 (MQ=255)
tGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGACCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCt < 2:3534367/150‑1 (MQ=255)
gcgggCAATTTAGTCCGCGCCATCCTGTTTGCCACCCTGATCAGCGCGAGGGGACTTTTTGAGGAGCCTTCTGTTCTTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCtg < 1:1242663/147‑1 (MQ=255)
gCCGGCAATTTAGCCGCCGCCTTGCTGTTTGCCCTCCTGACCAGCGCGCCGGGGCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCGATTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCtg < 1:2185451/150‑1 (MQ=255)
ggCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGGGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGGATTGTGTTTCAGGGGGAAGCAGTGc > 2:1181158/1‑150 (MQ=255)
aaTTTCATCGGCGCCATTCTGTTTGCCATCCTGACCAGCGCGACGGGACTTTTTCAGGAGCCTTCTGTCCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAAt < 1:2257169/150‑1 (MQ=255)
aaTTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAAt > 2:317132/1‑150 (MQ=255)
aaTTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAAt > 2:2804161/1‑150 (MQ=255)
aaTTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCCTCCGAATTGTTTTTCAGAGGAATGCTGTGCaaa > 2:1840399/1‑149 (MQ=255)
aaTTTAATCGGCGCCATTCTGTCTGCCATCCTGATCAGCGCCACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGTGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAAt > 1:1373623/1‑150 (MQ=255)
aTTTAACCGGCGCCATTCTGTTTCCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAAtt < 2:2991828/150‑1 (MQ=255)
tttAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCCAATTGTTTTTCAGAGGAATGCTGTGCAATTg > 2:2430154/1‑150 (MQ=255)
tCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGGTTTTCAGAGGAATGCTGGGCAATTGGCTtg > 1:891789/1‑150 (MQ=255)
gcCTTTCTGTTTGCCATCCTGATCAGCGCGACGGGTCTTTTTGAGGAGCCTTCTTTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGc < 2:2920332/150‑1 (MQ=255)
cATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCt > 2:2221732/1‑150 (MQ=255)
cATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGGGTGCCt > 2:2607875/1‑150 (MQ=255)
aTTCTTTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTc < 2:356110/150‑1 (MQ=255)
aTTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAAATGGCTTGTGGGCCTc > 1:1735864/1‑150 (MQ=255)
ctgtttGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGGGCCTCGcc > 1:1451201/4‑150 (MQ=255)
gtttGCCATCCTGATCAGCGCGACGGGACTTTTTGGGGAGCCTTCTGGTCATTCCTTTTTGATTCATTTGGCAGAGCACGAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGGGTGCCTCGCCtt > 1:2743928/2‑150 (MQ=255)
gtttGCCATCCTGACCAGCGCGAGGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtt < 1:361477/149‑1 (MQ=255)
ttGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt > 1:3399106/1‑150 (MQ=255)
gCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGGGTGCCTCGCCTTTTTc > 1:2313128/1‑150 (MQ=255)
ccATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGGGCCTCGCCTGTTTCa > 1:2917261/1‑150 (MQ=255)
tCTGATACGCGCGACGGAACTTTTGGAGGTGCCTTCTGTTTATTCCTTTTTGATCTATTTGCCAGAGCACAAAATGGTGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTcc < 1:1898470/150‑1 (MQ=255)
cTGACCAGCGCGGCGGGACTTTTTGAGGAGCCTTCTGATCATTCCTTTTTGATTCATTGGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCa < 2:2315572/150‑1 (MQ=255)
gATCAGCGCGAGGGGCCTTTTTGAGGAGCTTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAt < 2:1509382/150‑1 (MQ=255)
cAGGGCGAGGGGACTTTTTGAGGCGCCTTCTGTTCATTCCTTTTTGCTTCATTTGGCAGAGCAAAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGtc < 1:3172937/150‑1 (MQ=255)
cAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGtc > 2:3677351/1‑150 (MQ=255)
gccgcgACGGGCCTTTGTGAGGTGCCTTCTGTTCTTTCCTTTTTGATTCGTGTGGCAGAGCCCAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGtct < 2:1599189/148‑1 (MQ=255)
aGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGtct > 1:1281809/1‑150 (MQ=255)
gcgACGGGGCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCAAATTGTTTTTCAGAGGAATGCTGTGGAATTGGCTTGCGTGCCTCGCCTTTTTCACTCCCATGTctctc > 2:1116373/1‑149 (MQ=255)
gcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTctctc > 2:2707500/1‑149 (MQ=255)
ccgggacTTTTTGAGACCCCTTCTTTTCATTCTTTTTTGTTTCTTTTGGCAGACCACAAAATGGACCCGCCGGCTCCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCaaa < 1:3816452/144‑1 (MQ=255)
gggacTTTTTGAGGAGCTTTCTGTACTTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGGGGAATGCTGTGCAATTGGCTTGTGTGTCTCGCCTTTTTCATTCCAATGTCTCTCAaagg < 2:1382988/146‑1 (MQ=255)
ggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggg > 2:3901405/4‑150 (MQ=255)
acTTTTTGAGGAGCCTTCTGTTCATTCTTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggga < 2:3507722/149‑1 (MQ=255)
cTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggggaa > 2:3857284/1‑150 (MQ=255)
cTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCC‑TTTTCATTCCAATGTCTCTCAaaggggaag > 1:1674170/1‑150 (MQ=255)
tttttGAGGGGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCTGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAAGTCTCTCAaaggggaag > 1:3480180/1‑150 (MQ=255)
tttttGAGGAGCCTTCTGTTCCTTCCTTTTTGATTCATTTGGCCGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggggaag < 2:439292/150‑1 (MQ=255)
tttGAGGAGCCTTCTGTTCCTTCTTTTTTGATTCATTTGGCAGAGCCCAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaaggggaagga < 1:1150528/150‑2 (MQ=255)
gaggagCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGGGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCa > 1:401530/1‑150 (MQ=255)
gaggagCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCa < 2:1021456/150‑1 (MQ=255)
gaggagCCTTCTGCTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCa < 2:1690698/150‑1 (MQ=255)
aggagcCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATCGGCTTGTGTGCCTCGCCTTTTTCCTTCCAATGTCTCTCAAAGGGGAAGGAGCaa > 2:593572/1‑150 (MQ=255)
ggacctttCTGTCCATCCCTTTTTGATTCATTTGGCAGAGCACAAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCaaa < 1:46097/144‑1 (MQ=255)
agccTTCTGTTCTTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGc < 1:1054219/147‑1 (MQ=255)
gccTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGct > 1:2910321/3‑150 (MQ=255)
gccTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGct > 2:1923451/3‑150 (MQ=255)
ccTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGctt > 2:727132/2‑149 (MQ=255)
cTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGGGCAAAGcttt > 2:2269900/1‑148 (MQ=255)
ttCTGTTCATTCCTTTTTGATTCATTTGGCAGACCACAAATGGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCtttt < 1:3709057/150‑1 (MQ=255)
tCTGTTCATTCCTTTTTGATTCAGTTGGAAGAGCACAAATTGGGGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTtttt < 1:3016545/150‑1 (MQ=255)
cTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGGGCAAAGCTTTTTa > 2:3765595/1‑150 (MQ=255)
tgcccATTCCTTTTTGTTCCATTTGGCAGAGCACAAATTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGTGCAAAGCTTTTTAc < 1:1061285/146‑1 (MQ=255)
cTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCt > 1:1511895/1‑150 (MQ=255)
tttttGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGTTGcgt > 1:358060/1‑148 (MQ=255)
tttttGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCtt > 1:1331877/1‑150 (MQ=255)
ttGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTc > 2:807988/1‑150 (MQ=255)
tGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCg < 2:1281809/150‑1 (MQ=255)
ttcttttGGCAGAGCCCAAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGttt < 1:2538654/144‑1 (MQ=255)
cATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTc > 2:3298011/1‑150 (MQ=255)
tttGGCAGAGCACAAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTg < 1:3521834/148‑1 (MQ=255)
ttGGCAAAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGc < 1:1998412/149‑1 (MQ=255)
ttGGAAGACCACAAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGc < 2:2492241/149‑1 (MQ=255)
tGGCAGAGCACAATATGGGCCCGCCGGCTTCCGAATTGTTTTTCAGAGGTATGCTGTGCAATTGGCTTGTGGTCCTCGCCTTTTTCATTCCAATGTCTCTCGAAGGGGAAGGAGCAAAGCTTTTTTTCATGATGCTTTTCGTTTTCTGct < 1:3352579/150‑1 (MQ=255)
tGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGCGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGct > 2:2103395/1‑150 (MQ=255)
ggCAGAGCCCAAAGTGGCGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGctt < 1:814031/150‑1 (MQ=255)
gaagagCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGcttc < 1:3554089/148‑1 (MQ=255)
gagCCCAAAGTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGcttcttt < 1:2832228/150‑2 (MQ=255)
gagCACAAAATGGAGCCGCCGCCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAGGTCTCTCAAAAGGGGAGGAGCAAAGCTTTTTACCATGATGCCTTTCGGTTTCTGcctcttt > 1:991348/1‑149 (MQ=255)
agCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGcttcttta < 1:556214/150‑3 (MQ=255)
gCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGGTGCTTTTCGTTTTCTGCTTCTTTAt > 2:3271562/1‑150 (MQ=255)
cacaAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAtt < 1:2864031/150‑1 (MQ=255)
caAAATGGAGCCGCCGGCTTCCCAATTGTTCTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTATCATTCCAATGTCTCTCAAAGGGGGAGGAGCAAACCTTTTTACCATGATGCTTTTCGTTTTCTGCATCTTTATTTc > 1:185626/1‑150 (MQ=255)
aaaTGGTGCCGCCGGCTTCCGGATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGGGCAAAGCTTTTTACCATGATGCTTTTGGTTTTCTGCTTCTTTATTTCCg > 2:3108151/1‑150 (MQ=255)
aTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGGGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGc > 1:3888811/1‑150 (MQ=255)
tGGATCCGCGGGCTCCCGAGTTGTTTTCCAGAGGAATGCTGTGCACTTGGCTCGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAATGCTTTTAACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCt < 1:250870/150‑1 (MQ=255)
tGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTAGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCt > 2:3410181/1‑150 (MQ=255)
gccgccGGCTCCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGa < 1:2444287/150‑1 (MQ=255)
ccgccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGaa < 1:2645163/150‑1 (MQ=255)
ccgccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGaa < 1:3679039/150‑1 (MQ=255)
ggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAg > 2:2867252/2‑150 (MQ=255)
ttCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCAt > 2:3711571/1‑150 (MQ=255)
tCCGAATTGTTTTTCAGAGGAATGATGTGCAATTGGCTTGAGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTATACCATGATGCTTTTCGTTTTCTGCTTCTGTATTGCCGGCTTTGAACACAGCagt > 2:3045011/1‑148 (MQ=255)
ccGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTg < 2:1222618/150‑1 (MQ=255)
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CTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGAACACAGCATTGCC > CP006881/3723505‑3723798
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
