Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 113 306.8 9564096 98.5% 9420634 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,576 G→A G130G (GGG→GGA)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,5760GA97.0% 961.9 / NA 341G130G (GGG→GGA) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base G (2/1);  major base A (137/184);  minor base T (0/10);  total (140/201)
Fisher's exact test for biased strand distribution p-value = 6.29e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01

Only 100 of 341 total aligned reads displayed.

TTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAA  >  CP006881/3723429‑3723719
                                                                                                                                                   |                                                                                                                                               
    tttaCCGGCAACACCTCTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACttttt                                                                                                                                           <  2:26988/150‑1 (MQ=255)
     ttaCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTg                                                                                                                                          <  1:3086436/150‑1 (MQ=255)
      tcccggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTga                                                                                                                                         <  1:1650447/146‑1 (MQ=255)
      taCGGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTga                                                                                                                                         <  1:4529619/150‑1 (MQ=255)
      taCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTgg                                                                                                                                         >  2:3710872/1‑149 (MQ=255)
       accggCAACACCTTTTATTTCACCTATCCCGCGCTCTGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                                        <  1:38275/147‑1 (MQ=255)
          ggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTgaggag                                                                                                                                     >  1:166181/1‑150 (MQ=255)
           gCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGGCTTTTTgaggagc                                                                                                                                    >  2:2144109/1‑149 (MQ=255)
            cAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGCCACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGTCGGGACTTTTTgaggagcc                                                                                                                                   >  1:4705118/1‑148 (MQ=255)
             aaCACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCGGCTGGCGCGACCCCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCt                                                                                                                                  <  1:3252342/150‑1 (MQ=255)
             aaCACCTTTTATTCCACCTCTACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGCCGGGACTTTTTGAGGAGCCt                                                                                                                                  <  2:3881120/150‑1 (MQ=255)
               cacCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAAATTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCttt                                                                                                                                >  1:1808514/1‑149 (MQ=255)
                accttttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCt                                                                                                                               <  2:3489489/147‑1 (MQ=255)
                   ttttATTTCACCTATACCGCGCTCCGGAAAAATATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGtt                                                                                                                            <  1:1012344/150‑1 (MQ=255)
                    tttATTTCCCCTATACCGGGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAACCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTc                                                                                                                           <  1:86459/150‑1 (MQ=255)
                    tttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGGTc                                                                                                                           >  2:3152227/1‑150 (MQ=255)
                    tttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCAATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTc                                                                                                                           <  1:239852/150‑1 (MQ=255)
                      tATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACTCCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCAATCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCAt                                                                                                                         <  1:4773863/150‑1 (MQ=255)
                       aTTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCAtt                                                                                                                        <  1:28574/150‑1 (MQ=255)
                        tttCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTc                                                                                                                       >  2:4693035/1‑150 (MQ=255)
                          tCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCt                                                                                                                     >  1:1338090/1‑150 (MQ=255)
                            acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGGCACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTATTCGGCGCCATTCTGTTTGCCATCCTGGTCAGCGCGACGGGCCTTTTTGTGGAGCCTTCTGTTCATTCCttt                                                                                                                   >  1:652665/4‑150 (MQ=255)
                            acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCttt                                                                                                                   <  1:4669969/147‑1 (MQ=255)
                             cctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACCCCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTATGAGGAGCCTTCTGTTCATTCCtttt                                                                                                                  <  2:3956448/148‑1 (MQ=255)
                                ctaCCGCGCTCCGGAAAAAAAACAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGa                                                                                                               <  1:3658812/149‑1 (MQ=255)
                                  aCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAtt                                                                                                             <  2:1238354/150‑1 (MQ=255)
                                   ccGCGCTCCGGAAAAAAACCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTc                                                                                                            <  1:4247114/150‑1 (MQ=255)
                                    cgcgCTCCGGGAAAAAATCAGCTGGGGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAAATTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTATTTGAGGTGCCTTCTGTTCATTCCTTTTTGTTTCa                                                                                                           >  1:1478071/1‑150 (MQ=255)
                                    cgcgCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCa                                                                                                           >  2:1631080/1‑150 (MQ=255)
                                     gcgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGTTGTCAAGCTATGCCGGCAGTTTAGTCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCAt                                                                                                          >  1:1509431/1‑150 (MQ=255)
                                       gcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGGGCCTTCTGTTCATTCCTTTTTGATTCAttt                                                                                                        >  2:4102057/1‑148 (MQ=255)
                                        cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTg                                                                                                       >  1:1997528/1‑150 (MQ=255)
                                        cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATATg                                                                                                       <  1:2804619/150‑1 (MQ=255)
                                          ccGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGGGCCTTCTGTTCATTCCTTTTTGATTCATTTGGc                                                                                                     >  2:4243074/1‑150 (MQ=255)
                                          ccGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGc                                                                                                     <  2:2958965/150‑1 (MQ=255)
                                           cggaaaaaaaCCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                                    <  2:3258046/147‑1 (MQ=255)
                                            ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCag                                                                                                   >  2:1710317/3‑150 (MQ=255)
                                             gaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCaga                                                                                                  >  2:4332663/2‑150 (MQ=255)
                                                aaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                                               <  1:2975731/150‑1 (MQ=255)
                                                 aaaaTCAGCTGGCGCGACACCCTCTACTTGTGGATGTCAAGCTATGCCGGCAAGTTAATCGGCGCCATTCTGTTTGCCATCCTGGTCAGCGCGACGGGACTTTTTGTGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCTGAGcac                                                                                              >  1:2199969/1‑150 (MQ=255)
                                                 aaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGGTTCATTTGGCAGAGcac                                                                                              >  1:4316019/1‑150 (MQ=255)
                                                 aaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGcac                                                                                              <  1:2047102/150‑1 (MQ=255)
                                                 aaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGcac                                                                                              <  2:605332/150‑1 (MQ=255)
                                                  aaatcagCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGcaca                                                                                             <  1:2541195/144‑1 (MQ=255)
                                                  aaatcagCTGGCACGACACCCTATACTTGTGGATGCCAAGCTATGTCGGCAATTTAATCGACGCCATTCTGTTTGACATCCTGAACAGCGCGACGGGACTTATTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGcaca                                                                                             <  1:192954/144‑1 (MQ=255)
                                                     tcagCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACaaaa                                                                                          >  2:4289253/4‑150 (MQ=255)
                                                       agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTCGAGTCATCTGGCAGAGCACAAAATg                                                                                        >  1:1066691/2‑150 (MQ=255)
                                                        gcgggCGCGACCCCCTATCCTTGTGGATGTCAAGCTATGCCGGCAATTTAACCGGCGCCATTCTGTTTGCCACCCTGACCAGCGCGGCGGGACTTTTTGAGGAGCCTTCTATTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATgg                                                                                       <  1:3582431/147‑1 (MQ=255)
                                                        gCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATgg                                                                                       <  2:3575847/150‑1 (MQ=255)
                                                         cTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGGTTCATTTGGCAGAGCACAAAATGGa                                                                                      >  1:3409244/1‑150 (MQ=255)
                                                         cTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATGTGGCAGAGCCCAAAATGGa                                                                                      <  1:185530/150‑1 (MQ=255)
                                                           gccgcgaCACCCTATACTTGTGGATGACAAGCTAGGCCGGCAATTTAAGCGGCGCCTTTCTGTTTGCCATCCTGACCAGCGCGACGGGACTTATTGAGGAGCCTTCTGTTCCTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgc                                                                                    <  1:3908197/145‑1 (MQ=255)
                                                            gcgcGACACCCTATTCTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgcc                                                                                   <  1:945302/150‑1 (MQ=255)
                                                            gcgcGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgcc                                                                                   <  2:1433950/150‑1 (MQ=255)
                                                              gcgaCACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgc                                                                                 >  1:4105483/3‑150 (MQ=255)
                                                               cgaCACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgcc                                                                                >  2:913451/2‑150 (MQ=255)
                                                               cgaCACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccccc                                                                                >  2:830075/2‑150 (MQ=255)
                                                                gaCACCCTATACTTGTGGATGTCAAGCTATGCCGGAAATTTAATCGGCGCCATTCTGATTGCCATCCTGATCAGCGCGACAGCAAATTTTGTGGAGACTTCTGGACATTCCTTTTTGTTTCAATTGGCAGGGAAGAAAAAGGGGccgccc                                                                               >  2:2333578/1‑150 (MQ=255)
                                                                 ccacCCTATCCTTGTGGATGTCAAGCTTTGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgccgg                                                                              <  1:698312/149‑3 (MQ=255)
                                                                   acCCTATGCTTGTGGATGTCAAGCGATGCCGGCAATTTAACCGGCGCCCCTCTGTTTGCCATCCCGATCGGCGGGACGGGACTTGTTGAGGAGCCTTCTGTCCGTCCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                                            <  2:3328828/150‑1 (MQ=255)
                                                                     ccTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTc                                                                          >  2:1074943/1‑150 (MQ=255)
                                                                      ctatACTTGTGTATGTAAAGCTTTCCAGGCAATTTAACCGGCGCCTTTCTGTGTGCCACCCTGAACAGCGCGACGGGATTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATCCATTTGCCAGAGCACAAAATGGAGCCGCCGGCTTcc                                                                         <  2:1865437/147‑1 (MQ=255)
                                                                      ctatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                                                         >  2:3508416/4‑150 (MQ=255)
                                                                       tatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGGGGAGCCTTCTGTTCATTCCTTTTTGGTTCATTTGGCAGTGCACAAAATGGAGCCGCCGGCTTCCg                                                                        >  1:4209482/3‑150 (MQ=255)
                                                                        atccttgtgGATCTCACGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCTTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGa                                                                       <  1:2269143/145‑1 (MQ=255)
                                                                         tACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGaa                                                                      >  2:2421041/1‑150 (MQ=255)
                                                                             tgtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGt                                                                  >  1:1223753/1‑150 (MQ=255)
                                                                               tgGATGCCAGGCTATGCCGGCAATTTACTCGGGCCCTTTCTGTTTGCCCTCCGGATCAGCCGGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttt                                                                <  1:2138333/150‑1 (MQ=255)
                                                                                      cAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGGTTTTCagag                                                         >  2:2789740/1‑150 (MQ=255)
                                                                                       aggCTATGCCGGCAATTTACTCGGCCCCATTCTGTTTGCCATCCTGACCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTCCTTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgg                                                        <  2:1941564/148‑1 (MQ=255)
                                                                                         gCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTAGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGGTTTTCAGAggaa                                                      >  2:545749/1‑148 (MQ=255)
                                                                                          cTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGGGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAAt                                                     >  2:2258278/1‑150 (MQ=255)
                                                                                             tGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACATAATGGAGCCGCCGGCTTCCGAATTGGTTTTCAGAGGAATGCt                                                  >  1:1266184/1‑150 (MQ=255)
                                                                                              gCCGGCAGTTAAATCGGCCCCTTCCTGTTTCCCCCCCTGATCAGCGCGACGGGTCTTTTTGAGGAGCCTTCTGTCCATTCCTTTTTGTTTCTTTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCtg                                                 <  2:3690941/150‑1 (MQ=255)
                                                                                               ccGGCATTTTAATCGGCGCCTTTCTGTTTGCCACCCTGACCAGCGCGCCGGGACTTTTTGGGGAGCCTTCTGTTCATTCCTTTTTGTTTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCtgt                                                <  2:3537324/150‑1 (MQ=255)
                                                                                                  gCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGGGGAATGCTGTGCa                                             >  2:3067113/1‑150 (MQ=255)
                                                                                                  gCAATTTAATCGGCCCCATTCTGTTTGCCATCCTGATCGGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCa                                             <  1:3034285/150‑1 (MQ=255)
                                                                                                    aaTTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAAt                                           >  2:4746430/1‑150 (MQ=255)
                                                                                                        tactCGGCGCCATTCTGTTTCCCATCCTGATCAGCGCGACGGGACTTTTTGAGGACCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGc                                       <  2:1733512/147‑1 (MQ=255)
                                                                                                          aTCGGCCCCATTCTGTTTGCCATCTTAGTCAGGGCGCCGGGACTTTTTGAGGCCCCTTCTGTCCATCCCTTTTTGATTCTTTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCtt                                     <  2:4550015/150‑1 (MQ=255)
                                                                                                           tCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtg                                    <  1:1412486/150‑1 (MQ=255)
                                                                                                           tCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGGGCAATAGGCTtg                                    >  1:447834/1‑150 (MQ=255)
                                                                                                            cGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTCTTTCAGAGGAATGCTGGGCAATGGGGTtgt                                   >  2:754856/1‑150 (MQ=255)
                                                                                                             ggCGCCTTTCTGTTTGCCATCCTGAGCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtg                                  <  1:1132904/150‑1 (MQ=255)
                                                                                                             ggCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTACATCCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtg                                  <  1:3520648/150‑1 (MQ=255)
                                                                                                             ggCGCCATTCGGTTGGCCATCCTGAGCAGGGCGACGGGACTTTTTGAGGGGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtg                                  <  1:1166050/150‑1 (MQ=255)
                                                                                                               cgcCATTCTGTTTGGCATCCTGATCAGCCGGTCGGGTCTTTTTGGGGGCCCTTCTTTTCTTTCCTTTTTGATCCATTTGGAAGAGAACAAAATGGAACCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtgtg                                <  1:4400321/150‑1 (MQ=255)
                                                                                                                  cATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGGTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGGGCCt                             >  2:3938596/1‑150 (MQ=255)
                                                                                                                     cctgattGCCACCCTGACCAGGGCAGCGGGTCTTTTTGAGGAGCCTCCTGTTCGTTCCTCTGTGATTCATTCGGCAGAGCGCAAAATGGCGCCGCCGGCTTCCGAATTGTTTTCCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGc                          <  2:1686186/145‑1 (MQ=255)
                                                                                                                          ttGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATAGGTTTTCAGAGGACTGCGGTGCAATTGGCTTGTGTGCCTCGCCttct                     >  2:1177806/1‑148 (MQ=255)
                                                                                                                          tgcccATCCTGGTCGGCGCGGCGGGACTTTTTGAGGAGCCTTCTGTTCTTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt                     <  2:4009041/147‑1 (MQ=255)
                                                                                                                           tGCCTTCCTGACGAGCGGGCCGGGACTTTGTGGGGAGCCTTCTGTTCATTCCTTTTTGATCCTTTTGGCAGAGCCCAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCttttt                    <  1:2623629/150‑1 (MQ=255)
                                                                                                                            gccacccTGAGCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCTTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTc                   <  1:2682708/144‑1 (MQ=255)
                                                                                                                            gCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTc                   <  1:1631080/150‑1 (MQ=255)
                                                                                                                             ccATCCTGACCAGGGCGCCGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATCCATTTGGCAGAGCACAAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCa                  <  1:1707857/150‑1 (MQ=255)
                                                                                                                                     accAGCGCGTCGGGTCTTTTTGGGGTGCCTTCTGTTCTTTCCTTTTTGTTTCATTTGGCAGAGCACAAATTGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATg          <  1:2437227/148‑1 (MQ=255)
                                                                                                                                       cAGCGCGACGGGCCTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGtc        <  1:3185525/150‑1 (MQ=255)
                                                                                                                                       cAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGtc        >  2:1328533/1‑150 (MQ=255)
                                                                                                                                             gACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTATCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCaa  >  2:716995/1‑150 (MQ=255)
                                                                                                                                             gACGGGACTTTTGGAGGAGCCTTCTGTCCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCACGCCTTTTTCATTCCAATGTCTCTCaa  <  2:34153/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
TTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAA  >  CP006881/3723429‑3723719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A