Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17181920 F51 I0 R1 152 403.6 11685478 99.6% 11638736 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,723,534 G→A 100% L116L (TTG→TTA)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,5340GA100.0% 1362.8 / ‑6.6 390L116L (TTG→TTA) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base A (196/192);  total (198/192)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 390 total aligned reads displayed.

TTCGGGGCCGCTATTCTGCTGATTGCTTACGGAGGCGGAGATTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGG‑CTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTG  >  CP006881/3723388‑3723680
                                                                                                                                                  |                                                                                                                                                   
 tCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCg                                                                                                                                                 <  1:1962588/150‑1 (MQ=255)
  cGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCgg                                                                                                                                                <  1:1017607/150‑1 (MQ=255)
   ggggCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGgc                                                                                                                                               <  1:643881/150‑1 (MQ=255)
   ggggCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGgc                                                                                                                                               <  2:2055783/150‑1 (MQ=255)
   ggggCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGgc                                                                                                                                               >  2:3399283/1‑150 (MQ=255)
         gCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCAtt                                                                                                                                         >  2:2929170/1‑150 (MQ=255)
           tATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCt                                                                                                                                       <  2:3177601/150‑1 (MQ=255)
            aTTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCtg                                                                                                                                      <  2:5430164/150‑2 (MQ=255)
            aTTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTCGATGTCAAACTATGCCGGCAATTTAATCGGCGCCATTCtg                                                                                                                                      >  1:1828613/1‑149 (MQ=255)
             ttCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCtgt                                                                                                                                     <  1:1429865/150‑3 (MQ=255)
               ctgatgATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAGATCAGCTGGCGCGACACCCTATACTTGTGGATGACAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGttt                                                                                                                                   <  2:1686403/150‑1 (MQ=255)
                tgatgATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTg                                                                                                                                  >  1:5069649/4‑150 (MQ=255)
                     aTTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAtc                                                                                                                             <  2:5515949/150‑2 (MQ=255)
                     aTTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAtc                                                                                                                             <  2:1437753/150‑2 (MQ=255)
                      ttGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAtcc                                                                                                                            <  1:553470/150‑3 (MQ=255)
                       tGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCt                                                                                                                           >  2:3990872/1‑150 (MQ=255)
                        gCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGTTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTg                                                                                                                          >  2:1176878/1‑150 (MQ=255)
                        gCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTg                                                                                                                          >  2:746427/1‑150 (MQ=255)
                             cGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAg                                                                                                                     <  2:4863770/150‑1 (MQ=255)
                              ggAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAgc                                                                                                                    >  1:4134229/1‑150 (MQ=255)
                                aGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAgcgc                                                                                                                  <  1:8881/150‑1 (MQ=255)
                                   cGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGAc                                                                                                               >  2:213393/1‑150 (MQ=255)
                                   cGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGAc                                                                                                               <  1:5170813/150‑1 (MQ=255)
                                    ggAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGAcg                                                                                                              <  1:5434831/150‑2 (MQ=255)
                                      agaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACggg                                                                                                            >  2:2674045/1‑150 (MQ=255)
                                       gaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGGCACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACggga                                                                                                           >  2:3900781/1‑149 (MQ=255)
                                       gaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACggga                                                                                                           >  1:451908/1‑149 (MQ=255)
                                       gaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACggga                                                                                                           >  1:4768553/1‑149 (MQ=255)
                                        atttatttACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGGGACgggac                                                                                                          >  2:4506534/1‑148 (MQ=255)
                                        atttatttACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACgggac                                                                                                          >  1:3257165/1‑148 (MQ=255)
                                         tttatttaCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑Ct                                                                                                        >  1:80354/1‑150 (MQ=255)
                                           tatttaCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑Cttt                                                                                                      <  1:5645471/150‑1 (MQ=255)
                                            atttcCCGGCAACACCTTTTATTTCACCTATATCGCTCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTCCCATCCTGATCAGCGCGACGGGA‑Ctttt                                                                                                     <  1:4222061/150‑1 (MQ=255)
                                              ttaCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTg                                                                                                   >  2:112766/1‑150 (MQ=255)
                                               taCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgt                                                                                                  >  1:1303253/1‑149 (MQ=255)
                                               taCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGC‑ATAGGGACTTTTTga                                                                                                  >  2:3527936/1‑150 (MQ=255)
                                               taCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCG‑GAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgag                                                                                                 <  2:1586217/150‑1 (MQ=255)
                                                accggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgag                                                                                                 >  1:492058/4‑150 (MQ=255)
                                                accggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgag                                                                                                 <  2:4833504/147‑1 (MQ=255)
                                                 ccggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgagg                                                                                                >  2:2409168/3‑150 (MQ=255)
                                                   ggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAATAAATCAGCTCGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTTATCGGCGCCATTCTCTTTGCCATCCTGATGTGCGCGTCGGGA‑CTTTTTtaggag                                                                                              >  1:5253819/1‑150 (MQ=255)
                                                    gCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgaggagc                                                                                             >  2:4182889/1‑149 (MQ=255)
                                                      aaCACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCt                                                                                           <  2:5626328/150‑1 (MQ=255)
                                                      aaCACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCt                                                                                           <  2:131231/150‑1 (MQ=255)
                                                        cacCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTc                                                                                         >  1:2027393/1‑150 (MQ=255)
                                                        cacCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATACTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGTGCCTTc                                                                                         >  2:3012648/1‑150 (MQ=255)
                                                           cttttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGt                                                                                      <  1:4310059/149‑1 (MQ=255)
                                                              ttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCa                                                                                   <  2:3706666/150‑1 (MQ=255)
                                                                 tttCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTc                                                                                <  2:5716710/150‑1 (MQ=255)
                                                                    cACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                             >  1:2968787/1‑150 (MQ=255)
                                                                    cACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                             <  1:3560221/150‑1 (MQ=255)
                                                                    cACCTATACCGCGCTCCGAAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAAATTAATCGGCGCCATTCTGTTTGGCATCCTGATCAGCGCGACGGGA‑CTTTTTGTGGAGCCTTCTGTTCATTCCtt                                                                             >  1:2350403/1‑150 (MQ=255)
                                                                     acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCttt                                                                            >  2:2341418/4‑150 (MQ=255)
                                                                       ctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCttttt                                                                          <  1:5715091/149‑1 (MQ=255)
                                                                       ctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCttttt                                                                          >  1:384231/2‑150 (MQ=255)
                                                                        tataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                         <  2:1079349/150‑1 (MQ=255)
                                                                         ataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGa                                                                        >  2:2866213/1‑150 (MQ=255)
                                                                         ataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGa                                                                        >  2:5381107/1‑150 (MQ=255)
                                                                         ataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGa                                                                        >  2:4601790/1‑150 (MQ=255)
                                                                         ataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGa                                                                        >  1:3718827/1‑150 (MQ=255)
                                                                           aCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAtt                                                                      >  1:2313823/1‑150 (MQ=255)
                                                                           aCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAtt                                                                      <  1:3381776/150‑1 (MQ=255)
                                                                             cgcgCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCa                                                                    >  2:1875116/1‑150 (MQ=255)
                                                                                 cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTg                                                                >  1:3472842/1‑150 (MQ=255)
                                                                                  tCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGGGCCTTCTGTTCATTCCTTTTTGATTCATTTgg                                                               >  2:3763870/1‑150 (MQ=255)
                                                                                  tCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTgg                                                               >  2:814242/1‑150 (MQ=255)
                                                                                   ccGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGc                                                              <  2:668963/150‑1 (MQ=255)
                                                                                    cggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                             <  2:5111981/147‑1 (MQ=255)
                                                                                    cggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                             >  1:1702058/4‑150 (MQ=255)
                                                                                      gaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCaga                                                           >  2:3604005/2‑150 (MQ=255)
                                                                                           aaatcagCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGcaca                                                      <  2:1472702/144‑1 (MQ=255)
                                                                                             atcagCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACaaa                                                    <  2:4784517/146‑1 (MQ=255)
                                                                                                agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATg                                                 >  1:1532902/2‑150 (MQ=255)
                                                                                                agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATg                                                 >  2:5320567/2‑150 (MQ=255)
                                                                                                agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATg                                                 >  1:4854858/2‑150 (MQ=255)
                                                                                                   tGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAg                                              >  2:656603/1‑150 (MQ=255)
                                                                                                        cgaCACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgcc                                         <  1:2719654/149‑1 (MQ=255)
                                                                                                        cgaCACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgcc                                         <  2:1101003/149‑1 (MQ=255)
                                                                                                        cgaCACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCCTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgcc                                         >  2:2543162/2‑150 (MQ=255)
                                                                                                          acacCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgccgg                                       >  1:707416/1‑148 (MQ=255)
                                                                                                           cacCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGccgccggc                                      >  2:4380914/1‑150 (MQ=255)
                                                                                                             cccTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                    >  1:4420798/1‑150 (MQ=255)
                                                                                                             cccTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCCCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                    <  1:3972275/150‑1 (MQ=255)
                                                                                                               ctatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                  >  2:2778849/4‑150 (MQ=255)
                                                                                                                tatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGGGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAAGGGAGCCGCCGGCTTCCg                                 >  1:2075380/3‑150 (MQ=255)
                                                                                                                 atACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGa                                >  1:2562773/2‑150 (MQ=255)
                                                                                                                  tACTTGTGGATGTCAAGCCATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGaa                               >  1:1041998/1‑150 (MQ=255)
                                                                                                                   acttgtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGaat                              >  2:3362/4‑149 (MQ=255)
                                                                                                                      tgtgGATGTCAAGCTATGCCGCCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGGGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGt                           <  2:2218718/150‑1 (MQ=255)
                                                                                                                      tgtgGATGCCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGt                           <  1:1630826/150‑1 (MQ=255)
                                                                                                                         ggATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGtttt                        >  2:1271079/1‑150 (MQ=255)
                                                                                                                          gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                       >  2:3963940/1‑150 (MQ=255)
                                                                                                                           aTGTCATGCTGTGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑TTTTTTGAGGACCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGATCCGCCGGCTTCCGAATTGTTTTTc                      <  2:603211/150‑1 (MQ=255)
                                                                                                                               cAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCagag                  >  1:3172366/1‑150 (MQ=255)
                                                                                                                                aaGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgg                 >  2:1993032/1‑150 (MQ=255)
                                                                                                                                   cTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAAt              <  1:2146174/150‑1 (MQ=255)
                                                                                                                                     aTGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGc            >  1:3632244/1‑150 (MQ=255)
                                                                                                                                          ggCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGc       >  1:3112623/1‑150 (MQ=255)
                                                                                                                                             aaTTTAATCGGCGCCATTCTGTTTGCCATCCTGATGAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAAt    <  2:5045424/150‑1 (MQ=255)
                                                                                                                                              aTTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAAtt   >  2:4727325/1‑150 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
TTCGGGGCCGCTATTCTGCTGATTGCTTACGGAGGCGGAGATTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGG‑CTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTG  >  CP006881/3723388‑3723680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A