Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17181920 F51 I0 R1 152 403.6 11685478 99.6% 11638736 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,723,549 A→G 100% L121L (CTA→CTG)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,5490AG100.0% 1553.6 / ‑6.6 397L121L (CTA→CTG) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (204/191);  minor base C (1/0);  total (205/192)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 397 total aligned reads displayed.

TCTGCTGATTGCTTACGGAGGCGGAGATTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGG‑CTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGC  >  CP006881/3723402‑3723695
                                                                                                                                                   |                                                                                                                                                   
 ctgatgATTGCTTACGGAGGCGGAGATTTATTAACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGttt                                                                                                                                                  <  1:4103517/150‑1 (MQ=255)
   gatgATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGc                                                                                                                                                >  1:18580/3‑150 (MQ=255)
       aTTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAtc                                                                                                                                            <  2:1437753/150‑2 (MQ=255)
         tGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCt                                                                                                                                          >  2:3990872/1‑150 (MQ=255)
         tGCTTACGGAGGCGGAGATTTATTTACCGCCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCt                                                                                                                                          <  1:3916974/150‑1 (MQ=255)
          gCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTg                                                                                                                                         >  2:746427/1‑150 (MQ=255)
            ttACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCAGCGCCATTCTGTTTGCCATCCTGAt                                                                                                                                       >  2:2820047/1‑150 (MQ=255)
               cGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAg                                                                                                                                    <  2:4863770/150‑1 (MQ=255)
                       gagaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGAcgg                                                                                                                            <  2:1070803/150‑3 (MQ=255)
                         gaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGGCACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACggga                                                                                                                          >  2:3900781/1‑149 (MQ=255)
                         gaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACggga                                                                                                                          <  1:2203241/150‑2 (MQ=255)
                         gaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACggga                                                                                                                          >  1:451908/1‑149 (MQ=255)
                          atttatttACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGcgcgtcgggac                                                                                                                         >  2:4752801/1‑143 (MQ=255)
                          atttatttACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGGGACgggac                                                                                                                         >  2:4506534/1‑148 (MQ=255)
                          atttatttACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACgggac                                                                                                                         <  2:2535968/150‑3 (MQ=255)
                          atttatttACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACgggac                                                                                                                         >  1:3257165/1‑148 (MQ=255)
                           tttatttaCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑Ct                                                                                                                       >  2:4337180/1‑150 (MQ=255)
                                ttaCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTg                                                                                                                  >  1:2434847/1‑150 (MQ=255)
                                 taCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgt                                                                                                                 >  1:1303253/1‑149 (MQ=255)
                                 taCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTga                                                                                                                 <  1:2730278/150‑1 (MQ=255)
                                 taCCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGC‑ATAGGGACTTTTTga                                                                                                                 >  2:3527936/1‑150 (MQ=255)
                                  accggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgag                                                                                                                <  2:1162704/147‑1 (MQ=255)
                                   ccggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgagg                                                                                                               >  2:2409168/3‑150 (MQ=255)
                                      gCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgaggagc                                                                                                            <  2:614156/150‑2 (MQ=255)
                                       cAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGGTCAGCGCGACGGGA‑CTTTTTgaggagcc                                                                                                           >  1:5226179/1‑148 (MQ=255)
                                       cAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgaggagcc                                                                                                           >  2:2703055/1‑148 (MQ=255)
                                       cAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTgaggagcc                                                                                                           >  1:846323/1‑148 (MQ=255)
                                        aaCACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCt                                                                                                          <  2:131231/150‑1 (MQ=255)
                                         acacCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCtt                                                                                                         <  2:3383884/150‑1 (MQ=255)
                                         acacCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCtt                                                                                                         >  2:686217/1‑150 (MQ=255)
                                          cacCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTc                                                                                                        >  1:2027393/1‑150 (MQ=255)
                                            ccttttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTg                                                                                                      >  2:1931130/3‑150 (MQ=255)
                                             cttttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGt                                                                                                     >  1:5548166/2‑150 (MQ=255)
                                             cttttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGt                                                                                                     >  2:5455144/2‑150 (MQ=255)
                                              ttttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGtt                                                                                                    <  2:5375325/150‑1 (MQ=255)
                                                 tATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCAt                                                                                                 <  1:582701/150‑1 (MQ=255)
                                                 tATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCAt                                                                                                 >  2:3062864/1‑150 (MQ=255)
                                                      cACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                            <  1:3560221/150‑1 (MQ=255)
                                                       acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCttt                                                                                           >  2:2341418/4‑150 (MQ=255)
                                                       acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCttt                                                                                           <  1:746427/147‑1 (MQ=255)
                                                       acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCttt                                                                                           >  1:1953000/4‑150 (MQ=255)
                                                        cctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                                          >  2:2989463/3‑150 (MQ=255)
                                                         ctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCttttt                                                                                         >  1:384231/2‑150 (MQ=255)
                                                         ctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCttttt                                                                                         >  2:2194618/2‑150 (MQ=255)
                                                          tataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                                        >  2:1848005/1‑150 (MQ=255)
                                                          tataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                                        >  2:1111621/1‑150 (MQ=255)
                                                           ataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGa                                                                                       >  2:1578179/1‑150 (MQ=255)
                                                           ataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGa                                                                                       >  1:3718827/1‑150 (MQ=255)
                                                             aCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAtt                                                                                     <  1:3381776/150‑1 (MQ=255)
                                                               cgcgCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCa                                                                                   >  2:4700014/1‑150 (MQ=255)
                                                               cgcgCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCa                                                                                   <  1:4163052/150‑1 (MQ=255)
                                                                  gcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCTGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCAttt                                                                                >  1:1024008/1‑148 (MQ=255)
                                                                   cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTg                                                                               >  1:3472842/1‑150 (MQ=255)
                                                                    tCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGGGCCTTCTGTTCATTCCTTTTTGATTCATTTgg                                                                              >  2:3763870/1‑150 (MQ=255)
                                                                    tCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTgg                                                                              >  2:4189519/1‑150 (MQ=255)
                                                                    tCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTgg                                                                              >  1:3030000/1‑150 (MQ=255)
                                                                    tCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTgg                                                                              >  1:427836/1‑150 (MQ=255)
                                                                    tCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTgg                                                                              >  2:814242/1‑150 (MQ=255)
                                                                     ccGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGc                                                                             >  2:5202741/1‑150 (MQ=255)
                                                                      cggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                            >  1:1702058/4‑150 (MQ=255)
                                                                       ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAACGCGACGGGA‑CTTTTTGTGGTGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCag                                                                           >  1:5027859/3‑150 (MQ=255)
                                                                               atcagCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGAA‑CTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACaaa                                                                   >  1:5103619/5‑150 (MQ=255)
                                                                                tcagCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACaaaa                                                                  <  2:4820754/147‑1 (MQ=255)
                                                                                  agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATg                                                                >  1:1532902/2‑150 (MQ=255)
                                                                                  agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATg                                                                >  1:4854858/2‑150 (MQ=255)
                                                                                  agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATg                                                                <  1:441643/149‑1 (MQ=255)
                                                                                     tGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAg                                                             >  2:656603/1‑150 (MQ=255)
                                                                                       gcgcGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgcc                                                           <  1:692545/150‑1 (MQ=255)
                                                                                            acacCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGTTTCATTTGGCAGAGCACAAAATGGAgccgccgg                                                      >  2:210023/1‑148 (MQ=255)
                                                                                              acCCTATTCTTGTGGATGCCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                    <  2:2002120/150‑1 (MQ=255)
                                                                                              acCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                    >  2:5546832/1‑150 (MQ=255)
                                                                                               cccTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                                   >  2:1099921/1‑150 (MQ=255)
                                                                                                ccTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTc                                                  >  2:1470890/1‑150 (MQ=255)
                                                                                                ccTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTc                                                  >  2:2893810/1‑150 (MQ=255)
                                                                                                 ctatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                                 <  2:3606343/147‑1 (MQ=255)
                                                                                                  tatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGGGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAAGGGAGCCGCCGGCTTCCg                                                >  1:2075380/3‑150 (MQ=255)
                                                                                                        tgtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGATCCGCCGGCTTCCGAATTGt                                          <  1:5489954/150‑1 (MQ=255)
                                                                                                        tgtgGATGCCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGt                                          <  1:1630826/150‑1 (MQ=255)
                                                                                                          tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTCTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttt                                        >  1:490369/1‑150 (MQ=255)
                                                                                                           ggATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGtttt                                       >  2:1271079/1‑150 (MQ=255)
                                                                                                            gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                      >  2:3963940/1‑150 (MQ=255)
                                                                                                            gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGACCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                      <  2:5632141/150‑1 (MQ=255)
                                                                                                             aTGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTTATTCATTTGGCAGAGCACAAAATAGAGCCGCCGGCTTCCGAATTGTTTTTc                                     >  1:5266336/1‑150 (MQ=255)
                                                                                                              tGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCa                                    <  1:1111621/150‑1 (MQ=255)
                                                                                                                 cAAGCTATGCCGGCAATTTAATCGGCGCCATTTTGTTTGCCATCCTGACCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCagag                                 <  1:5696574/150‑1 (MQ=255)
                                                                                                                 cAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCagag                                 >  1:3172366/1‑150 (MQ=255)
                                                                                                                     cTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGGGACGGGA‑TTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAAt                             <  2:575373/150‑1 (MQ=255)
                                                                                                                       ttGCCGTCACTTTAATCGGCTCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCTTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGc                           <  2:5091302/149‑1 (MQ=255)
                                                                                                                       aTGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGc                           >  1:3632244/1‑150 (MQ=255)
                                                                                                                            ggCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGc                      >  1:3112623/1‑150 (MQ=255)
                                                                                                                               aaTTTAATCGGCGCCATTCTGTTTGCCATCCTGATGAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAAt                   <  2:5045424/150‑1 (MQ=255)
                                                                                                                                   taaTCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGc               >  2:16266/3‑150 (MQ=255)
                                                                                                                                    aaTCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCt              >  1:2322583/2‑150 (MQ=255)
                                                                                                                                        ggCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtg          >  2:3248971/1‑150 (MQ=255)
                                                                                                                                         gcgcCATTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtgt         >  2:2664184/1‑150 (MQ=255)
                                                                                                                                            ccATTCTGTTTCCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGcc      <  2:4570575/150‑1 (MQ=255)
                                                                                                                                              aTTCTGTTTGCCATCCTGATCATCGCCACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGCTTCATTTGGCAGAGCACAAAATGGACCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTc    >  1:2674242/1‑150 (MQ=255)
                                                                                                                                              aTTCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTc    <  2:3713413/150‑1 (MQ=255)
                                                                                                                                              aTTCTGTTTGCCATCCTGACCAGCGGGACGGGC‑CTTTTTGAGGAACCTCCTGTTCATTCCTTTTTGATACTTTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTc    <  1:4752801/150‑1 (MQ=255)
                                                                                                                                                tCTGTTTGCCATCCTGATCAGCGCGACGGGA‑CTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGc  >  1:1451904/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
TCTGCTGATTGCTTACGGAGGCGGAGATTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGG‑CTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGC  >  CP006881/3723402‑3723695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A