Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F55 I4 R1 119 110.4 4066752 95.0% 3863414 126.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,952 A→C K256Q (AAA→CAA)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,9520AC96.5% 376.2 / NA 114K256Q (AAA→CAA) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base A (1/3);  new base C (77/33);  total (78/36)
Fisher's exact test for biased strand distribution p-value = 9.23e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 114 total aligned reads displayed.

TTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGACCGCGGGAATGGTCATGATGGGCTGGATGTATTACACGCTCAATCCCGATAAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGACTCCGGCAAATGTAATTGATATTCACTTTTCAAA  >  CP006881/3723824‑3724086
                                                                                                                                |                                                                                                                                       
ttttGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTTAATCATGATCAATaaaaaa‑a                                                                                                                              <  6:177463/139‑1 (MQ=255)
     aTCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTc                                                                                                                          >  1:299093/1‑138 (MQ=255)
           cACCCTTATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCTTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGAt                                                                                                                   <  8:306488/139‑1 (MQ=255)
           cACCCTGAACCAGTCACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGCCCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGAt                                                                                                                   <  8:479497/139‑1 (MQ=255)
            ctggtGATAGAGGGAGAGTGATGGGAGCAGTAATAATCTTATTCCCCGTTAGGCGAGGCAATCTGACCGCGGGAATTGTTTTGATGGGCTGGATGTACTCCACACTGAATCGTGATCATTAAAAAA‑ACTTCCAGAGAt                                                                                                                   <  6:425645/134‑1 (MQ=255)
             cccTGATACAGTGACACTTATGGGAGCATTAATAAACTTAATCCCCGTTACGGTCGTCAATCTGACCGGGGGTATAGTTATGATGGGCTGGATGTACTACAAACTTAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCa                                                                                                                 <  8:354406/139‑1 (MQ=255)
                 gATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTcc                                                                                                             >  8:377534/1‑139 (MQ=255)
                      aGTGACACTTATGGGAGCATTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTCACCGCGGTAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCa                                                                                                        <  4:70807/139‑1 (MQ=255)
                      aGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCTTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACCCTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCa                                                                                                        <  8:248391/139‑1 (MQ=255)
                       gTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGc                                                                                                         >  1:280691/1‑137 (MQ=255)
                        tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGGCCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAg                                                                                                      >  4:459702/1‑139 (MQ=255)
                        tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTc                                                                                                                          <  3:41485/119‑1 (MQ=255)
                        tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTc                                                                                                                          >  4:41485/1‑119 (MQ=255)
                        tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAg                                                                                                      >  7:498429/1‑139 (MQ=255)
                        tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAg                                                                                                      >  3:417881/1‑139 (MQ=255)
                        tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAg                                                                                                      >  3:49073/1‑139 (MQ=255)
                        tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAg                                                                                                      >  2:268264/1‑139 (MQ=255)
                        tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAg                                                                                                      >  8:314797/1‑139 (MQ=255)
                        tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAg                                                                                                      >  1:167059/1‑139 (MQ=255)
                          acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGCCCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGt                                                                                                     >  8:438766/7‑138 (MQ=255)
                          acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGt                                                                                                     >  2:318547/7‑138 (MQ=255)
                          acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGt                                                                                                     >  3:495660/7‑138 (MQ=255)
                          acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGt                                                                                                     >  3:291230/7‑138 (MQ=255)
                            actgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCaa                                                                                                  <  4:495660/135‑1 (MQ=255)
                            actgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCaa                                                                                                  <  7:377534/135‑1 (MQ=255)
                            actgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCa                                                                                                   >  7:67371/5‑138 (MQ=255)
                                aTGGGAGCAGTCAGAACCTTAATCCCCGTTACGCGCGGCAATCTGACCGCGGGAATAGATATGAGGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCg                                                                                              <  4:496483/139‑1 (MQ=255)
                                aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCg                                                                                              <  4:417881/139‑1 (MQ=255)
                                aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCg                                                                                              >  3:395494/1‑139 (MQ=255)
                                     aGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTAt                                                                                         >  6:33050/1‑139 (MQ=255)
                                      gCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGCCCGCGGGAATAGTTATGATGGTCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTAtt                                                                                        >  3:122611/1‑139 (MQ=255)
                                          tCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGt                                                                                            >  7:23610/1‑131 (MQ=255)
                                          tCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTcc                                                                                      >  1:496675/1‑137 (MQ=255)
                                          tCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTcc                                                                                      >  5:398026/1‑137 (MQ=255)
                                            aGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgag                                                                                   <  8:498429/138‑1 (MQ=255)
                                            aGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgag                                                                                   <  1:318547/138‑1 (MQ=255)
                                            aGAAACTTAATCCACGTTTCGCTCGGCAATCTGACCGCTGGAATATTTATGATGGGCTGGATTTACTACAAACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgag                                                                                   <  2:155720/138‑1 (MQ=255)
                                              aaaCTTAATCCCCGTTACCCTCGGGAATATGACCGGGTTTTTAGTTATGATGGGCTGTCTTTACTAAACACTTAATCCTGTTAAAAAAAAAACACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgagag                                                                                 <  2:280691/139‑1 (MQ=255)
                                               aaCTTAATCCCCGTAACGAGCGGCAATCTGACCGCGGTAATAGTTATGATGGGCTGGATGTACTACACACTTAATCCTTATAAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGAt                                                                               <  4:49073/139‑1 (MQ=255)
                                                  ttAATCCCCGTAACGCTCGGCAATCTGCCCGCGGGAATAGTTATGATGGGCTGGATGTACTCCACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCtt                                                                            >  4:143314/1‑139 (MQ=255)
                                                    aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGTGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTg                                                                           >  6:451014/1‑138 (MQ=255)
                                                    aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGAt                                                                                                                   <  4:202969/98‑1 (MQ=255)
                                                    aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGAt                                                                                                                   >  3:202969/1‑98 (MQ=255)
                                                    aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgag                                                                                   >  1:473236/1‑130 (MQ=255)
                                                    aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgag                                                                                   <  2:473236/130‑1 (MQ=255)
                                                    aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTg                                                                           >  1:165685/1‑138 (MQ=255)
                                                           gTTACGCTCGGCAATCTGACCGCTGGAATAGTTATGATGGGCTCTATGTAATACACACTGAATCCTGATAAATAAAAAA‑ACTACCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGACAGAACTTGAAGACGCt                                                                   >  5:122714/1‑139 (MQ=255)
                                                           gTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCACAGCGGTTAGTCCGAGAGATCTTGAAGACGCt                                                                   >  2:500765/1‑139 (MQ=255)
                                                           gTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCt                                                                   >  8:420594/1‑139 (MQ=255)
                                                            ttACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATAAAAAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTg                                                                  <  3:55737/139‑1 (MQ=255)
                                                                 cTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGa                                                                          <  8:418066/126‑1 (MQ=255)
                                                                 cTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGa                                                                          >  7:418066/1‑126 (MQ=255)
                                                                  gcGGCAATCTGCCCGCGTTAATAGTTATGATGGGCGGGATGTACTACACACTGAATCATGATCAATAAAAAA‑ACTTCCAGAGTTCACTCCCTGCAAGTCAAAGCGGTTAATCCGAGAGATCTTGAAGACGCTGGACATg                                                            <  4:122611/138‑1 (MQ=255)
                                                                    ggCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATg                                                            >  1:324312/1‑137 (MQ=255)
                                                                    ggCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATg                                                            >  7:77141/1‑137 (MQ=255)
                                                                    ggCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATg                                                            >  1:12648/1‑137 (MQ=255)
                                                                    ggCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATg                                                            >  2:10728/1‑137 (MQ=255)
                                                                    ggCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATg                                                            >  4:175209/1‑137 (MQ=255)
                                                                     gCAATCTGCCCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAg                                                         <  3:380355/139‑1 (MQ=255)
                                                                     gCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTCAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAATGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAg                                                         >  4:353756/1‑139 (MQ=255)
                                                                      aaatcTGCCCGCGGGAATAGTTATTATGGGCTGTATTAACTACACACTCAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGc                                                        <  2:165685/135‑1 (MQ=255)
                                                                                 cgGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGcc                                             >  6:207788/1‑139 (MQ=255)
                                                                                            atgatgGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGatt                                  >  7:263131/1‑137 (MQ=255)
                                                                                               atgGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAg                                                         >  3:105197/1‑113 (MQ=255)
                                                                                               atgGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGc                                                        >  8:17743/1‑114 (MQ=255)
                                                                                               atgGGCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGc                                                        <  7:17743/114‑1 (MQ=255)
                                                                                                  ggCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGc                             >  6:334610/1‑138 (MQ=255)
                                                                                                   gCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTg                                                                  <  3:206647/100‑1 (MQ=255)
                                                                                                   gCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTg                                                                  >  4:206647/1‑100 (MQ=255)
                                                                                                   gCTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCa                            >  6:230803/1‑138 (MQ=255)
                                                                                                    cTGGATGTACTACACACTGAATCCTGATCATTAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTAtt                                                                                        <  7:67178/77‑1 (MQ=255)
                                                                                                    cTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTAtt                                                                                        >  8:67178/1‑77 (MQ=255)
                                                                                                    cTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGaa                                                                         <  7:98228/92‑1 (MQ=255)
                                                                                                    cTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCaaa                          >  7:59413/1‑139 (MQ=255)
                                                                                                    cTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCaaa                          >  5:154096/1‑139 (MQ=255)
                                                                                                    cTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCaaa                          >  8:121923/1‑139 (MQ=255)
                                                                                                    cTGGATGTACTACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCaaa                          >  5:34566/1‑139 (MQ=255)
                                                                                                         tGTACTACACACTGAATCCTGATCAAAAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTaa                     <  6:376256/139‑1 (MQ=255)
                                                                                                             ctACACACTGAATCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGa                 >  5:121908/2‑139 (MQ=255)
                                                                                                                  cactgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATAtt             >  4:200523/6‑138 (MQ=255)
                                                                                                                   actgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCa           >  8:87968/5‑139 (MQ=255)
                                                                                                                   actgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCa           >  2:121413/5‑139 (MQ=255)
                                                                                                                   actgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCa           >  8:142882/5‑139 (MQ=255)
                                                                                                                     ttaaTCCTGATCAATAAAAAA‑ACTTCAAGAGATCACTCCCTGCAAGTCAAAGCGGTAATTCCTAGAGATCATGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCaat         >  8:437581/3‑137 (MQ=255)
                                                                                                                     tgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgagag                                                                                 >  1:480991/3‑67 (MQ=255)
                                                                                                                     tgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgagag                                                                                 <  2:480991/65‑1 (MQ=255)
                                                                                                                     tgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGc                                                                    <  1:263758/78‑1 (MQ=255)
                                                                                                                     tgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGc                                                                    >  2:263758/3‑80 (MQ=255)
                                                                                                                     tgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAAt                    <  7:150367/126‑1 (MQ=255)
                                                                                                                     tgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCatt         >  8:139888/3‑137 (MQ=255)
                                                                                                                     tgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCatt         >  7:37953/3‑137 (MQ=255)
                                                                                                                     tgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCatt         >  5:283985/3‑137 (MQ=255)
                                                                                                                     tgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCatt         >  5:243560/3‑137 (MQ=255)
                                                                                                                     tgaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCAGGCAAATGTAAt                    >  8:150367/3‑128 (MQ=255)
                                                                                                                      gaaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCAttt        >  3:138887/2‑139 (MQ=255)
                                                                                                                       aaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCAtttt       >  8:48231/1‑139 (MQ=255)
                                                                                                                       aaTCCTGATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCAtttt       >  6:349715/1‑139 (MQ=255)
                                                                                                                          cctgATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCATTTTTc     >  6:150180/4‑138 (MQ=255)
                                                                                                                            tgATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCATTTTTCaa   >  5:200368/2‑138 (MQ=255)
                                                                                                                             gATCAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCAAATGTAATTGATATTCATTTTTCaaa  >  3:140350/1‑138 (MQ=255)
                                                                                                                                |                                                                                                                                       
TTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGACCGCGGGAATGGTCATGATGGGCTGGATGTATTACACGCTCAATCCCGATAAATAAAAAA‑ACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGACTCCGGCAAATGTAATTGATATTCACTTTTCAAA  >  CP006881/3723824‑3724086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A