Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F53 I19 R3 125 83.6 3029080 95.4% 2889742 127.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,897 C→T N237N (AAC→AAT)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,8970CT100.0% 376.7 / NA 107N237N (AAC→AAT) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (56/51);  total (56/51)

Only 100 of 107 total aligned reads displayed.

CTTCATTTCCGGCTTCGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGACCGCGGGAATGGTCATGATGGGCTGGATGTATTACA‑CGCTCAATCCCGATAAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAG  >  CP006881/3723768‑3724031
                                                                                                                                 |                                                                                                                                       
ctttATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACcgc                                                                                                                                 <  2:138791/138‑1 (MQ=255)
ctttATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACcgc                                                                                                                                 <  1:138362/138‑1 (MQ=255)
   taTTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCggg                                                                                                                              <  3:280224/137‑1 (MQ=255)
     tttCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAATCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGaa                                                                                                                            <  7:142560/138‑1 (MQ=255)
        ccGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAAtag                                                                                                                         <  7:106106/138‑3 (MQ=255)
         cGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGtt                                                                                                                       <  3:352598/139‑2 (MQ=255)
                   cacaGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCt                                                                                                             <  6:234876/139‑1 (MQ=255)
                     caGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTAGGCAATCTGACCGCGGGAATAGTTATGATGGGCTgg                                                                                                           <  1:160406/139‑1 (MQ=255)
                      aGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTg                                                                                                                                      <  1:155911/111‑1 (MQ=255)
                      aGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTg                                                                                                                                      >  2:155911/1‑111 (MQ=255)
                      aGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTgg                                                                                                           <  1:243565/138‑1 (MQ=255)
                      aGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTgg                                                                                                           >  2:243565/1‑138 (MQ=255)
                      aGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGa                                                                                                          >  4:348580/1‑139 (MQ=255)
                       gCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGAt                                                                                                         <  7:149452/139‑1 (MQ=255)
                             ccAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCCGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTa                                                                                                   <  2:47211/139‑1 (MQ=255)
                                atatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  <  6:251875/137‑1 (MQ=255)
                                atatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  >  5:251875/1‑137 (MQ=255)
                                atatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTaca                                                                                                 >  8:269120/1‑138 (MQ=255)
                                 tatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTaca‑ca                                                                                              >  3:327840/1‑138 (MQ=255)
                                 tatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTaca‑ca                                                                                              <  7:269120/139‑2 (MQ=255)
                                  atGTGCACATTCGCCATCTCGCTTTTGATCGCGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactactcac                                                                                              >  1:296651/1‑135 (MQ=255)
                                  atGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTaca‑cac                                                                                             >  6:46493/1‑137 (MQ=255)
                                   tgtgCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACt                                                                                            <  4:327840/139‑1 (MQ=255)
                                     tgCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACtg                                                                                           >  4:268911/1‑137 (MQ=255)
                                       cacaTTCGCCATCTCGCTTTTGATCGAGCCCCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAAt                                                                                        >  1:272933/1‑139 (MQ=255)
                                       cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAAtag                                                                                                                         >  2:312995/1‑105 (MQ=255)
                                       cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAAtag                                                                                                                         <  1:312995/107‑3 (MQ=255)
                                       cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTgg                                                                                                           >  7:281165/1‑121 (MQ=255)
                                       cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTgg                                                                                                           <  8:281165/121‑1 (MQ=255)
                                       cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGt                                                                                                       >  5:58256/1‑125 (MQ=255)
                                       cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGt                                                                                                       <  6:58256/125‑1 (MQ=255)
                                         caTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATcc                                                                                      >  8:109062/1‑139 (MQ=255)
                                            tCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTatg                                                                                                                    <  1:201356/107‑1 (MQ=255)
                                            tCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTatg                                                                                                                    >  2:201356/1‑107 (MQ=255)
                                            tCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTgg                                                                                                           >  7:61919/1‑116 (MQ=255)
                                            tCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGa                                                                                   >  1:20815/1‑139 (MQ=255)
                                            tCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGa                                                                                   >  7:326859/1‑139 (MQ=255)
                                                 aTCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGatcaa                                                                               >  2:286235/1‑138 (MQ=255)
                                                    tcgcTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGaa                                                                                                                            >  3:181158/4‑91 (MQ=255)
                                                    tcgcTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGaa                                                                                                                            <  4:181158/88‑1 (MQ=255)
                                                      gcTTTTGAGCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTCCGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATaaaaa                                                                         <  6:294265/138‑1 (MQ=255)
                                                             aTCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTcc                                                                  <  7:201039/139‑1 (MQ=255)
                                                                 aGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  <  8:360627/104‑1 (MQ=255)
                                                                 aGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  >  7:360627/1‑104 (MQ=255)
                                                                      ccTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGCATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATcct                                                         >  7:284717/1‑137 (MQ=255)
                                                                       cTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                        <  8:326859/139‑1 (MQ=255)
                                                                       cTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                        <  7:109062/139‑1 (MQ=255)
                                                                        ggATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAACCTTCCAGAGATCACTc                                                       >  2:345330/2‑139 (MQ=255)
                                                                            aCAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTg                                                   <  3:268911/139‑1 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTACTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATATTTATGATGGGCTGGATGTACTACA‑AACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                               >  3:231447/1‑139 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGCCCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                               >  3:282417/1‑139 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGa                                                                                                                             <  8:36944/62‑1 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTatg                                                                                                                    <  2:355472/71‑1 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  <  7:237961/89‑1 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  >  8:237961/1‑89 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACt                                                                                            >  5:298238/1‑94 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACt                                                                                            <  6:298238/94‑1 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGatc                                                                                 >  2:222198/1‑104 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGatc                                                                                 <  1:222198/105‑2 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                               >  1:355442/1‑139 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                               >  5:185268/1‑139 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                               >  5:265471/1‑139 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                               >  5:84796/1‑139 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                               >  1:289414/1‑139 (MQ=255)
                                                                                tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                               >  3:196820/1‑139 (MQ=255)
                                                                                  acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                        >  8:304285/7‑128 (MQ=255)
                                                                                  acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                        <  7:304285/122‑1 (MQ=255)
                                                                                  acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGt                                              >  8:204182/7‑138 (MQ=255)
                                                                                  acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTc                                             >  7:45859/7‑139 (MQ=255)
                                                                                  acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTAATACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGt                                              >  3:102198/7‑138 (MQ=255)
                                                                                    actgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  <  5:187861/81‑1 (MQ=255)
                                                                                    actgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  >  6:187861/5‑85 (MQ=255)
                                                                                        aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                        >  2:199369/1‑122 (MQ=255)
                                                                                        aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAg                                         <  4:183982/137‑1 (MQ=255)
                                                                                        aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAg                                         <  6:84796/137‑1 (MQ=255)
                                                                                        aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCg                                       >  1:3957/1‑139 (MQ=255)
                                                                                        aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCg                                       >  5:266870/1‑139 (MQ=255)
                                                                                        aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGAAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                        <  1:199369/122‑1 (MQ=255)
                                                                                          gggAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGaa                                                                                                                            >  2:210798/1‑53 (MQ=255)
                                                                                          gggAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGaa                                                                                                                            <  1:210798/53‑1 (MQ=255)
                                                                                             aGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTAt                                  >  7:26878/1‑139 (MQ=255)
                                                                                             aGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTAt                                  >  5:161323/1‑139 (MQ=255)
                                                                                                  tCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCATAGATCACTCCCTGCAAGTCAAAGCGGTTAtt                                 <  7:113758/135‑1 (MQ=255)
                                                                                                  tCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTAtt                                 >  8:113758/1‑135 (MQ=255)
                                                                                                    aGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgaga                           <  1:286235/139‑1 (MQ=255)
                                                                                                            aaaccccGTTACGCTCGGCAATCTGACCGCGTTAATTGTTATTATGGGCGTGATGTAATACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGa                   <  4:102198/135‑1 (MQ=255)
                                                                                                            aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  <  7:311113/61‑1 (MQ=255)
                                                                                                            aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  >  8:311113/1‑61 (MQ=255)
                                                                                                            aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTg                    >  5:200664/1‑138 (MQ=255)
                                                                                                             atccccGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGa                   <  7:205697/135‑1 (MQ=255)
                                                                                                                cccGTTACCCGCGGCAATCTGACCGCGGTAATATTTATGATGGGCTGTTTGTA‑CACACCACTCAACCCTCACCAATAAAAACACTTCCACAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGAc               <  4:196820/139‑1 (MQ=255)
                                                                                                                  cGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGc             >  2:293216/1‑139 (MQ=255)
                                                                                                                  cGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGc             <  3:348580/139‑1 (MQ=255)
                                                                                                                   gTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgagag                          <  8:173651/125‑1 (MQ=255)
                                                                                                                   gTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgagag                          >  7:173651/1‑125 (MQ=255)
                                                                                                                   gTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCt            >  3:112729/1‑139 (MQ=255)
                                                                                                                            ggCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  >  3:178774/1‑45 (MQ=255)
                                                                                                                            ggCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                  <  4:178774/45‑1 (MQ=255)
                                                                                                                            gccAATCTGACCGGGGGAATAGTTATGATGGGCTGGATGTACACCA‑CACTGAATCCTCATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTC‑AAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAg  <  6:92288/137‑1 (MQ=255)
                                                                                                                             gCAATCTGCCCGCGGGAATAGTTATGAGGGGCTGGATGTACTACA‑CACTTAATCCTGATCAAAAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAg  <  2:289414/139‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                       
CTTCATTTCCGGCTTCGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGACCGCGGGAATGGTCATGATGGGCTGGATGTATTACA‑CGCTCAATCCCGATAAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAG  >  CP006881/3723768‑3724031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A