Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F53 I19 R3 125 83.6 3029080 95.4% 2889742 127.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,933 T→C Y249Y (TAT→TAC)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,9330TC97.1% 240.3 / ‑1.9 70Y249Y (TAT→TAC) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (40/27);  minor base A (1/1);  total (41/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.01e-01

CCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGACCGCGGGAATGGTCATGATGGGCTGGATGTATTACA‑CGCTCAATCCCGATAAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGACTCCGGCAAA  >  CP006881/3723797‑3724062
                                                                                                                                        |                                                                                                                                  
ccAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCCGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTa                                                                                                                                  <  2:47211/139‑1 (MQ=255)
   atatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 >  5:251875/1‑137 (MQ=255)
   atatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 <  6:251875/137‑1 (MQ=255)
   atatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTaca                                                                                                                                >  8:269120/1‑138 (MQ=255)
    tatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTaca‑ca                                                                                                                             >  3:327840/1‑138 (MQ=255)
    tatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTaca‑ca                                                                                                                             <  7:269120/139‑2 (MQ=255)
     atGTGCACATTCGCCATCTCGCTTTTGATCGCGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactactcac                                                                                                                             >  1:296651/1‑135 (MQ=255)
     atGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTaca‑cac                                                                                                                            >  6:46493/1‑137 (MQ=255)
      tgtgCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACt                                                                                                                           <  4:327840/139‑1 (MQ=255)
        tgCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACtg                                                                                                                          >  4:268911/1‑137 (MQ=255)
          cacaTTCGCCATCTCGCTTTTGATCGAGCCCCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAAt                                                                                                                       >  1:272933/1‑139 (MQ=255)
            caTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATcc                                                                                                                     >  8:109062/1‑139 (MQ=255)
               tCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGa                                                                                                                  >  1:20815/1‑139 (MQ=255)
               tCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGa                                                                                                                  >  7:326859/1‑139 (MQ=255)
                    aTCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGatcaa                                                                                                              >  2:286235/1‑138 (MQ=255)
                         gcTTTTGAGCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTCCGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATaaaaa                                                                                                        <  6:294265/138‑1 (MQ=255)
                                aTCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTcc                                                                                                 <  7:201039/139‑1 (MQ=255)
                                    aGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 >  7:360627/1‑104 (MQ=255)
                                    aGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 <  8:360627/104‑1 (MQ=255)
                                         ccTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGCATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATcct                                                                                        >  7:284717/1‑137 (MQ=255)
                                          cTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                                                       <  8:326859/139‑1 (MQ=255)
                                          cTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                                                       <  7:109062/139‑1 (MQ=255)
                                           ggATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAACCTTCCAGAGATCACTc                                                                                      >  2:345330/2‑139 (MQ=255)
                                               aCAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTg                                                                                  <  3:268911/139‑1 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTACTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATATTTATGATGGGCTGGATGTACTACA‑AACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                                                              >  3:231447/1‑139 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGCCCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                                                              >  3:282417/1‑139 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 >  8:237961/1‑89 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 <  7:237961/89‑1 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACt                                                                                                                           <  6:298238/94‑1 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACt                                                                                                                           >  5:298238/1‑94 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGatc                                                                                                                <  1:222198/105‑2 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGatc                                                                                                                >  2:222198/1‑104 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                                                              >  1:289414/1‑139 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                                                              >  1:355442/1‑139 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                                                              >  3:196820/1‑139 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                                                              >  5:84796/1‑139 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                                                              >  5:265471/1‑139 (MQ=255)
                                                   tGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAg                                                                              >  5:185268/1‑139 (MQ=255)
                                                     acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                                                       <  7:304285/122‑1 (MQ=255)
                                                     acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                                                       >  8:304285/7‑128 (MQ=255)
                                                     acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGt                                                                             >  8:204182/7‑138 (MQ=255)
                                                     acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTc                                                                            >  7:45859/7‑139 (MQ=255)
                                                     acactgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTAATACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGt                                                                             >  3:102198/7‑138 (MQ=255)
                                                       actgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 <  5:187861/81‑1 (MQ=255)
                                                       actgaTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 >  6:187861/5‑85 (MQ=255)
                                                           aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                                                       >  2:199369/1‑122 (MQ=255)
                                                           aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAg                                                                        <  6:84796/137‑1 (MQ=255)
                                                           aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAg                                                                        <  4:183982/137‑1 (MQ=255)
                                                           aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCg                                                                      >  5:266870/1‑139 (MQ=255)
                                                           aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCg                                                                      >  1:3957/1‑139 (MQ=255)
                                                           aTGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGAAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACt                                                                                       <  1:199369/122‑1 (MQ=255)
                                                                aGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTAt                                                                 >  5:161323/1‑139 (MQ=255)
                                                                aGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTAt                                                                 >  7:26878/1‑139 (MQ=255)
                                                                     tCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCATAGATCACTCCCTGCAAGTCAAAGCGGTTAtt                                                                <  7:113758/135‑1 (MQ=255)
                                                                     tCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTAtt                                                                >  8:113758/1‑135 (MQ=255)
                                                                       aGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgaga                                                          <  1:286235/139‑1 (MQ=255)
                                                                               aaaccccGTTACGCTCGGCAATCTGACCGCGTTAATTGTTATTATGGGCGTGATGTAATACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGa                                                  <  4:102198/135‑1 (MQ=255)
                                                                               aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 >  8:311113/1‑61 (MQ=255)
                                                                               aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 <  7:311113/61‑1 (MQ=255)
                                                                               aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCa                                                                                                <  7:116392/93‑1 (MQ=255)
                                                                               aaTCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTg                                                   >  5:200664/1‑138 (MQ=255)
                                                                                atccccGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGa                                                  <  7:205697/135‑1 (MQ=255)
                                                                                   cccGTTACCCGCGGCAATCTGACCGCGGTAATATTTATGATGGGCTGTTTGTA‑CACACCACTCAACCCTCACCAATAAAAACACTTCCACAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGAc                                              <  4:196820/139‑1 (MQ=255)
                                                                                     cGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGc                                            >  2:293216/1‑139 (MQ=255)
                                                                                     cGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGc                                            <  3:348580/139‑1 (MQ=255)
                                                                                      gTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgagag                                                         >  7:173651/1‑125 (MQ=255)
                                                                                      gTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCgagag                                                         <  8:173651/125‑1 (MQ=255)
                                                                                      gTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCt                                           >  3:112729/1‑139 (MQ=255)
                                                                                               ggCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 <  4:178774/45‑1 (MQ=255)
                                                                                               ggCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGtactac                                                                                                                                 >  3:178774/1‑45 (MQ=255)
                                                                                               gccAATCTGACCGGGGGAATAGTTATGATGGGCTGGATGTACACCA‑CACTGAATCCTCATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTC‑AAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAg                                 <  6:92288/137‑1 (MQ=255)
                                                                                                gCAATCTGCCCGCGGGAATAGTTATGAGGGGCTGGATGTACTACA‑CACTTAATCCTGATCAAAAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAg                                 <  2:289414/139‑1 (MQ=255)
                                                                                                           gcgGGAATAGTTATGATGGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGc                      >  6:71358/1‑139 (MQ=255)
                                                                                                                  tagttatgatgGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTc               <  6:185268/134‑1 (MQ=255)
                                                                                                                       atgatgGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGatt          >  3:249855/1‑137 (MQ=255)
                                                                                                                        tgatgGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGatt          <  7:204182/138‑3 (MQ=255)
                                                                                                                        tgatgGGCTGGATGTACTACA‑CACTGAACCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGatt          <  5:119595/138‑3 (MQ=255)
                                                                                                                          atgGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCg       <  6:161323/139‑1 (MQ=255)
                                                                                                                          atgGGCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCg       >  2:251468/1‑139 (MQ=255)
                                                                                                                             ggCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGc     <  5:71358/138‑1 (MQ=255)
                                                                                                                              gCTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCa    >  7:188658/1‑138 (MQ=255)
                                                                                                                               cTGGATGTACTACC‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGATTCCGGCaaa  >  4:158332/1‑139 (MQ=255)
                                                                                                                               cTGGATGTACTACA‑CACTGAATCCTGATCAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGCTTCCGGCaaa  >  6:81331/1‑139 (MQ=255)
                                                                                                                                        |                                                                                                                                  
CCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGACCGCGGGAATGGTCATGATGGGCTGGATGTATTACA‑CGCTCAATCCCGATAAATAAAAAAACTTCCAGAGATCACTCCCTGCAAGTCAAAGCGGTTATTCCGAGAGATCTTGAAGACGCTGGACATGCAGCGTGATATAGCCGGCCTCGGACTCCGGCAAA  >  CP006881/3723797‑3724062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A