Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F55 I0 R1 217 81.2 3243344 95.0% 3081176 126.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,723,652 C→T 100% L156L (CTG→TTG)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,6520CT100.0% 286.4 / NA 83L156L (CTG→TTG) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (47/36);  total (47/36)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCC‑CGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGAAC  >  CP006881/3723518‑3723787
                                                                                                                                       |                                                                                                                                       
gCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGtt                                                                                                                                     >  4:118750/1‑139 (MQ=255)
   aTGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGttttt                                                                                                                                  >  1:325704/1‑139 (MQ=255)
    tGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGttttt                                                                                                                                  <  7:68011/138‑1 (MQ=255)
    tGCCGGCAATTTAAGCGGCGCAATTCTGTTTGCCATCCTGATCCGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGttttt                                                                                                                                  <  6:216575/138‑1 (MQ=255)
          cAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGttttt                                                                                                                                  >  6:123117/1‑132 (MQ=255)
          cAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGttttt                                                                                                                                  <  5:123117/132‑1 (MQ=255)
          cAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAgga                                                                                                                           <  7:212764/139‑2 (MQ=255)
          cAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCATTTTGATTCAATTGTCAGAGCACAAAATGGAGCAGCC‑CGCTTCCGAATTGTTTTTCATAgg                                                                                                                            >  4:160672/1‑138 (MQ=255)
           aaTTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAggaa                                                                                                                          >  8:374707/1‑137 (MQ=255)
             tttAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATg                                                                                                                        <  1:61716/139‑1 (MQ=255)
                           ttCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCt                                                                                                          >  7:295606/1‑139 (MQ=255)
                           ttCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTACTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTgggt                                                                                                          >  1:318926/1‑137 (MQ=255)
                               gtttGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCCCAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTAAGAGGAATTCTGTGCAATTGGCTtgtg                                                                                                      >  3:340890/2‑139 (MQ=255)
                                tttGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGGCTGCCGAATTGTTTTTCAGAGGAAGGCTGTGCAATTGGATggtg                                                                                                      >  2:251337/1‑139 (MQ=255)
                                   gCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATg                                                                                                                        >  5:363405/1‑117 (MQ=255)
                                   gCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATg                                                                                                                        <  6:363405/117‑1 (MQ=255)
                                   gCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGcc                                                                                                  <  6:354087/139‑1 (MQ=255)
                                     cATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTc                                                                                                >  7:94847/1‑139 (MQ=255)
                                            aTCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑TGCTTCCGAATTTTTTTTAAGATGAATTCTGTGCAATTGTCTTGTGTGCCTCGCCtttt                                                                                         >  4:363443/1‑139 (MQ=255)
                                            aTCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGcc                                                                                             <  3:128702/135‑1 (MQ=255)
                                            aTCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGcc                                                                                             >  4:128702/1‑135 (MQ=255)
                                            aTCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt                                                                                         >  6:167977/1‑139 (MQ=255)
                                            aTCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt                                                                                         >  4:267693/1‑139 (MQ=255)
                                             tCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCttttt                                                                                        <  6:699/139‑1 (MQ=255)
                                                 cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCa                                                                                                                 >  6:379237/1‑110 (MQ=255)
                                                 cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCa                                                                                                                 <  5:379237/110‑1 (MQ=255)
                                                 cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCAtt                                                                                    >  4:379513/1‑139 (MQ=255)
                                                 cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGAACAAAATGGAGCCGCC‑GGCATCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCAtt                                                                                    >  8:38704/1‑139 (MQ=255)
                                                    gACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCa                                                                                 <  4:334204/139‑1 (MQ=255)
                                                      cgggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCTGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCTTTCCAAt                                                                               >  8:392328/6‑139 (MQ=255)
                                                      cgggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAt                                                                               >  3:404628/6‑139 (MQ=255)
                                                      cgggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAt                                                                               <  3:298328/134‑1 (MQ=255)
                                                      cgggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAt                                                                               >  4:293555/6‑139 (MQ=255)
                                                      cgggacTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGGGCCTCGCCTTTTTCATTCCAAt                                                                               <  1:77123/134‑1 (MQ=255)
                                                            tttttGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGtctc                                                                          >  7:339723/1‑138 (MQ=255)
                                                              tttGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTctctc                                                                        >  6:372822/1‑137 (MQ=255)
                                                               ttGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTctctca                                                                       <  8:339723/138‑3 (MQ=255)
                                                               ttGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATACCAATGTctctca                                                                       <  6:154136/138‑3 (MQ=255)
                                                                     cgcattCTTTTCATTACTTTTTTATTAATTTGCCAGACCACAAATTGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggga                                                                <  3:247503/135‑1 (MQ=255)
                                                                     agccTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggga                                                                <  3:293555/136‑1 (MQ=255)
                                                                     agccTTCTGTTAATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggga                                                                <  7:374707/136‑1 (MQ=255)
                                                                      gccTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggg                                                                 >  5:152239/3‑137 (MQ=255)
                                                                         ttCTGTTCATTCCTTTTTGATTCATTTGGCAGCGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAt                                                                               >  6:342934/1‑120 (MQ=255)
                                                                         ttCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAt                                                                               <  5:342934/120‑1 (MQ=255)
                                                                            tgtgaaTTCCTTTTTGATACATTTGGAAGAGCACAAAATGCTGCCGAC‑GGCTTCAGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCa                                                         <  6:250983/134‑1 (MQ=255)
                                                                              ttCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCaa                                                        <  6:152239/138‑1 (MQ=255)
                                                                              ttCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCa                                                         <  2:223722/137‑1 (MQ=255)
                                                                                 aTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGct                                                    >  2:146618/1‑139 (MQ=255)
                                                                                   tCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAt                                                                               <  8:96721/110‑1 (MQ=255)
                                                                                   tCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAt                                                                               >  7:96721/1‑110 (MQ=255)
                                                                                   tCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGcttt                                                  >  3:298476/1‑137 (MQ=255)
                                                                                      tttttGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTACGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTtttt                                                >  7:174401/1‑138 (MQ=255)
                                                                                        tttGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGcttt                                                  <  6:198003/134‑3 (MQ=255)
                                                                                        tttGATTCATTTGGCAGAGCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGcttt                                                  >  5:198003/1‑132 (MQ=255)
                                                                                                         agCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGtttt                            >  3:371687/1‑139 (MQ=255)
                                                                                                          gCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTc                           >  4:390673/1‑139 (MQ=255)
                                                                                                          gCACAAAATGGAGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCACTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTc                           >  8:236986/1‑139 (MQ=255)
                                                                                                                     aGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCCTTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt                >  1:355827/1‑139 (MQ=255)
                                                                                                                     aGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCa                                                         <  2:111887/98‑1 (MQ=255)
                                                                                                                     aGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCa                                                         >  1:111887/1‑98 (MQ=255)
                                                                                                                     aGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt                >  8:58657/1‑139 (MQ=255)
                                                                                                                     aGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt                >  1:365582/1‑139 (MQ=255)
                                                                                                                     aGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt                >  4:150433/1‑139 (MQ=255)
                                                                                                                     aGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt                >  1:81978/1‑139 (MQ=255)
                                                                                                                     aGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt                >  5:191735/1‑139 (MQ=255)
                                                                                                                     aGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCATTTTACCATGAAGCTTTTCGTTTTCTGGTTCTTTAt                >  8:380255/1‑139 (MQ=255)
                                                                                                                     aGCCGCC‑GGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCGCGCCGTTTTGAATCCAATTTCTCTCAAAGGGGAAGGCGCAAACCTTTTTACCAAGATTCTTTTCGTTTTGttcttcgttat                >  6:264057/1‑134 (MQ=255)
                                                                                                                        cgcc‑ggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAttta             >  2:46463/1‑138 (MQ=255)
                                                                                                                        cgcc‑ggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTc             >  3:141906/1‑139 (MQ=255)
                                                                                                                        cgcc‑ggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTc             <  5:309873/139‑1 (MQ=255)
                                                                                                                        cgcc‑ggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCGTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTc             <  7:392328/139‑1 (MQ=255)
                                                                                                                           ccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCTCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCg           <  3:232487/136‑1 (MQ=255)
                                                                                                                           ccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCg           >  7:370974/4‑139 (MQ=255)
                                                                                                                              gcgtCCGTATTGTTTTTCAGAGGAATGCAGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGTAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCt        <  5:355740/136‑1 (MQ=255)
                                                                                                                              gcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCt        <  3:215861/139‑1 (MQ=255)
                                                                                                                                ttCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTc             >  5:361442/1‑132 (MQ=255)
                                                                                                                                ttCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTc             <  6:361442/132‑1 (MQ=255)
                                                                                                                                ttCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCttt      >  7:283540/1‑138 (MQ=255)
                                                                                                                                  cagAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGTGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCttt      <  3:160672/135‑2 (MQ=255)
                                                                                                                                   cGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGaa   <  5:159773/139‑1 (MQ=255)
                                                                                                                                    gAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAac  <  8:174401/139‑1 (MQ=255)
                                                                                                                                    gAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAac  <  6:340688/139‑1 (MQ=255)
                                                                                                                                    gAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAac  <  5:372822/139‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
GCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCC‑CGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGAAC  >  CP006881/3723518‑3723787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A