Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A17 F55 I0 R1
|
217 |
81.2 |
3243344 |
95.0% |
3081176 |
126.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP006881 |
3,723,783 |
C→T |
100% |
F199F (TTC→TTT) |
U712_19195 → |
putative transporter ywcJ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 3,723,783 | 0 | C | T | 100.0%
| 292.7
/ NA
| 84 | F199F (TTC→TTT) | U712_19195 | putative transporter ywcJ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (31/53); total (31/53) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGACCGCGGGAATGGTCATG > CP006881/3723648‑3723918
|
cGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGa‑a < 5:159773/139‑1 (MQ=255)
gAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ac < 6:340688/139‑1 (MQ=255)
gAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ac < 5:372822/139‑1 (MQ=255)
gAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ac < 8:174401/139‑1 (MQ=255)
aattGTTATTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑aca < 4:519/136‑1 (MQ=255)
ttGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑Acaca < 1:146618/138‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCa < 3:267693/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCa < 3:379513/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCa < 5:264057/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCa < 7:181654/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCa < 7:58657/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCa < 4:298476/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCa < 1:251337/139‑1 (MQ=255)
ttgttCAGAGGAATGCTGTGCAATTGGCTTGTGGGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCa < 2:355827/136‑1 (MQ=255)
agagGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAATGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGcc < 3:363443/138‑1 (MQ=255)
agagGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGcc < 5:391035/138‑1 (MQ=255)
agagGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGcc < 5:167977/138‑1 (MQ=255)
agagGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCa < 8:295606/139‑1 (MQ=255)
agGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGTCTTTGA‑ACACAGCATTGCCAat < 7:38704/139‑1 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGa‑a > 5:116815/1‑114 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGa‑a < 6:116815/114‑1 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAat > 5:283399/1‑129 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAat < 6:283399/129‑1 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACAt > 7:128843/1‑139 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACAt > 5:246554/1‑139 (MQ=255)
cAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAat > 2:84695/1‑127 (MQ=255)
cAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAat < 1:84695/127‑1 (MQ=255)
ttGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGc > 1:158314/1‑138 (MQ=255)
gCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCAtc < 3:150433/139‑1 (MQ=255)
tgtgCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGAATTGCCAATATGTGCACATTCGCCATCTCGCt > 4:393012/1‑139 (MQ=255)
cTCGCCTATTTCATTCCAATGTCTCTCAAAGGGGAAGGCGCAAAACTTTTTACCATGATTCGATTCGTTTAATTATTGATAATTTCCGGCTTTGACAAACA‑CAATTCCAAAAAGAGCACATTCGACATCTCGCgtttta > 6:42915/1‑137 (MQ=255)
cGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATc > 8:328336/1‑139 (MQ=255)
cTTTTTCCTTCCAATGTCTCTCACAGGGGACGGAGCAAAGCATTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 6:70934/139‑1 (MQ=255)
cTTTTTCATTCCCATGTCTCTCAAAGGGGAAGGAGCACAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 2:325704/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 2:81978/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 2:365582/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 3:230449/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 4:141906/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 3:118750/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 4:404628/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTATTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACAATCGCCATCTCGCTTTTGATCGAg < 4:340890/139‑1 (MQ=255)
cTTTTTCATTCCAATGGCTCTCAAAGGGGAAGGAGCAAAGCTTGTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 6:238061/139‑1 (MQ=255)
tCATTCCAATGTCTCTCAACGGGGAAGGAGCAAAGCGTGTTACCATGATGCTTTTCGTGTGCTGCTTCTTTATTTCCGGCGTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGCGCAcc < 6:264644/138‑1 (MQ=255)
tCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCAcc < 4:371687/138‑1 (MQ=255)
tCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCAcc < 8:177666/138‑1 (MQ=255)
ttCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGa < 8:370974/139‑1 (MQ=255)
cAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATa < 8:94847/138‑1 (MQ=255)
ctcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACac > 6:253951/4‑138 (MQ=255)
ctcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACac > 3:359144/4‑138 (MQ=255)
ctcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACac > 2:391244/4‑138 (MQ=255)
tcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACa < 3:393012/135‑1 (MQ=255)
tcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACa < 7:380255/135‑1 (MQ=255)
gaaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTTCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg < 8:283540/139‑1 (MQ=255)
gaaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCa < 1:13497/113‑1 (MQ=255)
gaaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCa > 2:13497/1‑113 (MQ=255)
gaaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg < 1:391244/139‑1 (MQ=255)
gaaggagCAAAGCTTTTTACAATGATGCTTTTCGTTTTCTGCGTCTTTATTTCCTGCTTTGA‑ACACAGAATTCCCAATATGAGCACATTCGCCATCTCGCTTTTGATCGAGCAACCTGATACAGTGACACTGATGGCAg > 2:24476/1‑139 (MQ=255)
aaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg > 3:41468/1‑138 (MQ=255)
aggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg > 1:138848/1‑137 (MQ=255)
gagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg > 1:160032/3‑107 (MQ=255)
gagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 2:160032/105‑1 (MQ=255)
tttttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACt > 6:278372/3‑138 (MQ=255)
tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGa < 1:87230/104‑1 (MQ=255)
tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGa > 2:87230/1‑104 (MQ=255)
tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTaa > 7:242592/1‑139 (MQ=255)
tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTaa > 5:98523/1‑139 (MQ=255)
tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTaa > 1:92942/1‑139 (MQ=255)
tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTaa > 5:79738/1‑139 (MQ=255)
atgatgCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCg < 6:246554/139‑1 (MQ=255)
tgatgCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCAtc < 2:243730/74‑1 (MQ=255)
tgatgCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCAtc > 1:243730/1‑74 (MQ=255)
tgatgCTTTTCGTTGTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGt > 4:139616/1‑139 (MQ=255)
ttCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCg > 4:341547/1‑139 (MQ=255)
ttCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCg > 6:395661/1‑139 (MQ=255)
ttCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCg > 5:35295/1‑139 (MQ=255)
gTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGc > 4:148613/1‑138 (MQ=255)
taTTTCCGGCTTTGA‑ACAGAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCggg < 6:191735/137‑1 (MQ=255)
taTTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCggg < 3:341547/137‑1 (MQ=255)
tttCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGaa < 4:41468/138‑1 (MQ=255)
tttCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGaa < 1:46463/138‑1 (MQ=255)
gCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATa < 6:118222/66‑1 (MQ=255)
gCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATa > 5:118222/1‑66 (MQ=255)
gCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTat > 6:315717/1‑139 (MQ=255)
cTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTatg < 2:92942/139‑1 (MQ=255)
|
CGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGACCGCGGGAATGGTCATG > CP006881/3723648‑3723918
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
