Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F55 I0 R1 217 81.2 3243344 95.0% 3081176 126.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,723,822 A→G 100% S212S (TCA→TCG)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,8220AG100.0% 309.0 / NA 84S212S (TCA→TCG) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (36/48);  total (36/48)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGACCGCGGGAATGGTCATGATGGGCTGGATGTATTACACGCTCAATCCCGAT  >  CP006881/3723686‑3723951
                                                                                                                                         |                                                                                                                                 
tgtgCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGAATTGCCAATATGTGCACATTCGCCATCTCGCt                                                                                                                                 >  4:393012/1‑139 (MQ=255)
     cTCGCCTATTTCATTCCAATGTCTCTCAAAGGGGAAGGCGCAAAACTTTTTACCATGATTCGATTCGTTTAATTATTGATAATTTCCGGCTTTGACAAACA‑CAATTCCAAAAAGAGCACATTCGACATCTCGCgtttta                                                                                                                            >  6:42915/1‑137 (MQ=255)
       cGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATc                                                                                                                          >  8:328336/1‑139 (MQ=255)
          cTTTTTCCTTCCAATGTCTCTCACAGGGGACGGAGCAAAGCATTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  6:70934/139‑1 (MQ=255)
          cTTTTTCATTCCCATGTCTCTCAAAGGGGAAGGAGCACAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  2:325704/139‑1 (MQ=255)
          cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  2:81978/139‑1 (MQ=255)
          cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  3:118750/139‑1 (MQ=255)
          cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  2:365582/139‑1 (MQ=255)
          cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  4:141906/139‑1 (MQ=255)
          cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  3:230449/139‑1 (MQ=255)
          cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  4:404628/139‑1 (MQ=255)
          cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTATTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACAATCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  4:340890/139‑1 (MQ=255)
          cTTTTTCATTCCAATGGCTCTCAAAGGGGAAGGAGCAAAGCTTGTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  6:238061/139‑1 (MQ=255)
               tCATTCCAATGTCTCTCAACGGGGAAGGAGCAAAGCGTGTTACCATGATGCTTTTCGTGTGCTGCTTCTTTATTTCCGGCGTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGCGCAcc                                                                                                                   <  6:264644/138‑1 (MQ=255)
               tCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCAcc                                                                                                                   <  8:177666/138‑1 (MQ=255)
               tCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCAcc                                                                                                                   <  4:371687/138‑1 (MQ=255)
                  ttCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGa                                                                                                               <  8:370974/139‑1 (MQ=255)
                     cAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATa                                                                                                             <  8:94847/138‑1 (MQ=255)
                             ctcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACac                                                                                                    >  3:359144/4‑138 (MQ=255)
                             ctcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACac                                                                                                    >  6:253951/4‑138 (MQ=255)
                             ctcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACac                                                                                                    >  2:391244/4‑138 (MQ=255)
                              tcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACa                                                                                                     <  7:380255/135‑1 (MQ=255)
                              tcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACa                                                                                                     <  3:393012/135‑1 (MQ=255)
                                      gaaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTTCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg                                                                                           <  8:283540/139‑1 (MQ=255)
                                      gaaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCa                                                                                                                     <  1:13497/113‑1 (MQ=255)
                                      gaaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCa                                                                                                                     >  2:13497/1‑113 (MQ=255)
                                      gaaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg                                                                                           <  1:391244/139‑1 (MQ=255)
                                      gaaggagCAAAGCTTTTTACAATGATGCTTTTCGTTTTCTGCGTCTTTATTTCCTGCTTTGA‑ACACAGAATTCCCAATATGAGCACATTCGCCATCTCGCTTTTGATCGAGCAACCTGATACAGTGACACTGATGGCAg                                                                                           >  2:24476/1‑139 (MQ=255)
                                       aaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg                                                                                           >  3:41468/1‑138 (MQ=255)
                                        aggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg                                                                                           >  1:138848/1‑137 (MQ=255)
                                          gagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  2:160032/105‑1 (MQ=255)
                                          gagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       >  1:160032/3‑107 (MQ=255)
                                                   tttttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACt                                                                               >  6:278372/3‑138 (MQ=255)
                                                     tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGa                                                                                                               >  2:87230/1‑104 (MQ=255)
                                                     tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGa                                                                                                               <  1:87230/104‑1 (MQ=255)
                                                     tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTaa                                                                            >  5:98523/1‑139 (MQ=255)
                                                     tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTaa                                                                            >  1:92942/1‑139 (MQ=255)
                                                     tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTaa                                                                            >  5:79738/1‑139 (MQ=255)
                                                     tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTaa                                                                            >  7:242592/1‑139 (MQ=255)
                                                           atgatgCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCg                                                                      <  6:246554/139‑1 (MQ=255)
                                                            tgatgCTTTTCGTTGTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGt                                                                     >  4:139616/1‑139 (MQ=255)
                                                                    ttCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCg                                                             >  6:395661/1‑139 (MQ=255)
                                                                    ttCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCg                                                             >  5:35295/1‑139 (MQ=255)
                                                                    ttCGTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCg                                                             >  4:341547/1‑139 (MQ=255)
                                                                       gTTTTCTGCTTCTTTATTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGc                                                           >  4:148613/1‑138 (MQ=255)
                                                                                     taTTTCCGGCTTTGA‑ACAGAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCggg                                             <  6:191735/137‑1 (MQ=255)
                                                                                     taTTTCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCggg                                             <  3:341547/137‑1 (MQ=255)
                                                                                       tttCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGaa                                           <  1:46463/138‑1 (MQ=255)
                                                                                       tttCCGGCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGaa                                           <  4:41468/138‑1 (MQ=255)
                                                                                             gCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATa                                                                                                             >  5:118222/1‑66 (MQ=255)
                                                                                             gCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATa                                                                                                             <  6:118222/66‑1 (MQ=255)
                                                                                             gCTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTat                                    >  6:315717/1‑139 (MQ=255)
                                                                                              cTTTGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTatg                                   <  2:92942/139‑1 (MQ=255)
                                                                                                 tgA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTatga                                  <  3:148613/136‑1 (MQ=255)
                                                                                                     acacAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGc                             <  6:98523/139‑1 (MQ=255)
                                                                                                     acacAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGc                             <  6:79738/139‑1 (MQ=255)
                                                                                                      cacaGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCt                            <  7:328336/139‑1 (MQ=255)
                                                                                                      cacaGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCt                            <  2:158314/139‑1 (MQ=255)
                                                                                                      cacaGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCt                            <  8:128843/139‑1 (MQ=255)
                                                                                                        caGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTgg                          <  5:315717/139‑1 (MQ=255)
                                                                                                         aGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       <  2:147110/45‑1 (MQ=255)
                                                                                                         aGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg                                                                                                                       >  1:147110/1‑45 (MQ=255)
                                                                                                         aGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCt                            <  6:335474/136‑1 (MQ=255)
                                                                                                         aGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCt                            >  5:335474/1‑136 (MQ=255)
                                                                                                             ttGCCAATATGTGCTCAATCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGAGGGAATAGTTATTATGGGCTGGATGTa                     <  5:42915/139‑1 (MQ=255)
                                                                                                              tGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCt                            >  3:363489/1‑131 (MQ=255)
                                                                                                              tGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCt                            <  4:363489/131‑1 (MQ=255)
                                                                                                              tGCCAATATGTGCACATTCGCCATATCGCTTTTGATCGAGAACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTa                     >  5:74736/1‑138 (MQ=255)
                                                                                                                ccAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTa                  <  8:242592/139‑1 (MQ=255)
                                                                                                                   atatGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTacac               >  8:323658/1‑139 (MQ=255)
                                                                                                                     atGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACcgc                                                <  7:175617/104‑1 (MQ=255)
                                                                                                                     atGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACcgc                                                >  8:175617/1‑104 (MQ=255)
                                                                                                                      tgtgCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACt            <  3:390673/139‑1 (MQ=255)
                                                                                                                      tgtgCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACt            <  7:236986/139‑1 (MQ=255)
                                                                                                                        tgCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACtg           <  7:323658/138‑2 (MQ=255)
                                                                                                                          cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCg                                                                      >  6:75513/1‑77 (MQ=255)
                                                                                                                          cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCg                                                                      <  5:75513/77‑1 (MQ=255)
                                                                                                                          cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTatgat                                 >  3:32155/1‑114 (MQ=255)
                                                                                                                          cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTatgat                                 <  4:32155/114‑1 (MQ=255)
                                                                                                                          cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAAt        >  4:63538/1‑139 (MQ=255)
                                                                                                                          cacaTTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAAt        >  7:46025/1‑139 (MQ=255)
                                                                                                                               tCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTgg                          >  8:159857/1‑116 (MQ=255)
                                                                                                                               tCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTgg                          <  7:159857/116‑1 (MQ=255)
                                                                                                                                cGCCATCTCGCTTTTGATAGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGACCGCGGGAATAGTTATGATGGGCTGGATGTACTACACACTGAATCCTGat  >  2:369288/1‑139 (MQ=255)
                                                                                                                                         |                                                                                                                                 
TGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGA‑ACACAGCATTGCCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGACCGCGGGAATGGTCATGATGGGCTGGATGTATTACACGCTCAATCCCGAT  >  CP006881/3723686‑3723951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A