Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A18 F53 I5 R2 122 92.4 3471984 95.3% 3308800 125.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,492 A→C R102R (CGA→CGC)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,4920AC100.0% 240.6 / NA 63R102R (CGA→CGC) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (30/33);  total (30/33)

CGTTTGCTTTTCCGGCAGCCGCTGTCACATTCGGGGCCGCTATTCTGCTGATTGCTTACGGAGGCGGAGATTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCC‑GAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGA  >  CP006881/3723359‑3723623
                                                                                                                                      |                                                                                                                                   
cGTTTGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGTGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGGGCTCC‑GGAAAAAAATCAGCTGGCgcga                                                                                                                                   <  2:323921/136‑1 (MQ=255)
cGTTTGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCgcga                                                                                                                                   <  2:79501/136‑1 (MQ=255)
cGTTTGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCgcga                                                                                                                                   <  2:295792/136‑1 (MQ=255)
cGTTTGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCgcga                                                                                                                                   <  2:194228/136‑1 (MQ=255)
cGTTTGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGaca                                                                                                                                 <  7:192845/138‑1 (MQ=255)
cGTTTGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGaca                                                                                                                                 <  8:356755/138‑1 (MQ=255)
cGTTTGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCGTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGaca                                                                                                                                 <  1:93245/138‑1 (MQ=255)
cGTTTGCCTTTCCGGCAGCCGCTGTCACTTGCGGGGCCGCTATTCTGATGATTCATAACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCgcga                                                                                                                                   <  1:313461/136‑1 (MQ=255)
 gTTTGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGac                                                                                                                                  <  3:254252/136‑1 (MQ=255)
 gTTTGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACAcc                                                                                                                               <  1:247388/139‑1 (MQ=255)
 gTTTGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACAcc                                                                                                                               <  1:299541/139‑1 (MQ=255)
   ttGCCTTTCCGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑G‑GAAAAAATCAGCTGGCGCGacaca                                                                                                                               >  5:76476/1‑135 (MQ=255)
       ctttCCGGCAGCCGCTGTCACTTTCGGGGACGCTATTCTGATGATTGCTTTCGGAGGCGGAGATTTATTTAGCGTCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCta                                                                                                                            <  4:315220/135‑2 (MQ=255)
            cGGCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATAct                                                                                                                        <  6:92651/135‑2 (MQ=255)
             ggCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATAct                                                                                                                        <  5:408258/134‑2 (MQ=255)
             ggCAGCCGCTGTCACTTTCGGGGCCGCTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATAct                                                                                                                        >  6:408258/1‑133 (MQ=255)
                                       cTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAAttt                                                                                            <  5:204262/136‑1 (MQ=255)
                                       cTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAAt                                                                                         <  1:56013/139‑1 (MQ=255)
                                       cTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAAt                                                                                         <  1:372619/139‑1 (MQ=255)
                                       cTATTCTGATGATTGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAAt                                                                                         <  7:335914/139‑1 (MQ=255)
                                                    tGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCt                                                                             <  8:380000/138‑1 (MQ=255)
                                                    tGCTTACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCt                                                                             >  7:380000/1‑138 (MQ=255)
                                                       ttACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCAttatg                                                                            >  4:62971/1‑133 (MQ=255)
                                                       ttACGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGAGATCC‑GGATAAAAATCAGCTGGCGCGACAACCTATAATTGTGGATGTCAAGCTATGCCTGCAATTTAATCGGCGCCATTCtg                                                                            >  5:156830/1‑135 (MQ=255)
                                                         aCGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTg                                                                        <  7:115089/138‑1 (MQ=255)
                                                         aCGGAGGCGGAGATTTATTTACCGGCAACACATTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGc                                                                       >  2:68229/1‑139 (MQ=255)
                                                                  gagaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCt                                                                 >  6:394267/1‑136 (MQ=255)
                                                                   agaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTGAGTTTGCCagactg                                                                >  5:273358/1‑131 (MQ=255)
                                                                   agaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCt                                                                 >  6:367356/1‑135 (MQ=255)
                                                                   agaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCt                                                                 >  3:116697/1‑135 (MQ=255)
                                                                             accggCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGAcgg                                                   >  8:307840/4‑137 (MQ=255)
                                                                              ccggCAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGAc                                                     <  5:151535/134‑1 (MQ=255)
                                                                              ccggCAACACCTTGTAATTCACCTATCCCGCGCTCC‑GGAAAAAAAGCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACggg                                                  <  2:271479/137‑1 (MQ=255)
                                                                                  cAACACCTTTTATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGAGCAGCGCGACggga                                                 >  5:29638/1‑135 (MQ=255)
                                                                                        cttttATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACttttt                                           <  4:116697/135‑1 (MQ=255)
                                                                                        cttttATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTgag                                        <  7:98998/138‑1 (MQ=255)
                                                                                          tttATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGCCACCCTATACTTGTGGAAGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTgag                                        >  1:107703/1‑137 (MQ=255)
                                                                                           ttATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTgagga                                      <  1:68229/138‑1 (MQ=255)
                                                                                           ttATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTga                                         <  5:367356/135‑1 (MQ=255)
                                                                                            tATTTCACCTATACCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTgagg                                       >  5:229496/1‑136 (MQ=255)
                                                                                                  acctataCCGCGCTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTGGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTg                              >  2:417105/4‑139 (MQ=255)
                                                                                                      atcccGCGCACC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCCTTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGt                             <  6:379564/133‑1 (MQ=255)
                                                                                                          cgcgCTCCGGAAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCtgt                                                                           <  3:254440/87‑3 (MQ=255)
                                                                                                          cgcgCTCCGGAAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCtgt                                                                           >  4:254440/1‑85 (MQ=255)
                                                                                                           gcgcTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGAGCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTcgt                     >  1:397877/1‑137 (MQ=255)
                                                                                                            cgcTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCgg                                                                                      <  7:430158/73‑1 (MQ=255)
                                                                                                            cgcTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCgg                                                                                      >  8:430158/1‑73 (MQ=255)
                                                                                                            cgcTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                    >  7:16888/1‑139 (MQ=255)
                                                                                                            cgcTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                    >  1:155353/1‑139 (MQ=255)
                                                                                                            cgcTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                    >  8:253873/1‑139 (MQ=255)
                                                                                                              cTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTg                                                                        >  1:418618/1‑85 (MQ=255)
                                                                                                              cTCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTg                                                                        <  2:418618/85‑1 (MQ=255)
                                                                                                               tCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGt                             >  6:104054/1‑127 (MQ=255)
                                                                                                               tCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGt                             <  5:104054/127‑1 (MQ=255)
                                                                                                               tCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                    >  5:9563/1‑136 (MQ=255)
                                                                                                               tCC‑GGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                    >  5:68400/1‑136 (MQ=255)
                                                                                                                  cggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTgag                                        >  1:60961/4‑114 (MQ=255)
                                                                                                                  cggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTgag                                        <  2:60961/111‑1 (MQ=255)
                                                                                                                  cggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTga                                         <  5:8035/110‑1 (MQ=255)
                                                                                                                  cggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTga                                         >  6:8035/4‑113 (MQ=255)
                                                                                                                  cggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                  >  6:261037/4‑136 (MQ=255)
                                                                                                                  cggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                  >  5:13314/4‑136 (MQ=255)
                                                                                                                  cggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGa               >  7:128876/4‑139 (MQ=255)
                                                                                                                   ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTATTCGGCGCCATTCTGTTTGAGATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCttttt                 <  6:156830/134‑1 (MQ=255)
                                                                                                                      aaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAt              <  6:229496/136‑1 (MQ=255)
                                                                                                                              agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTg       <  3:100972/134‑1 (MQ=255)
                                                                                                                               gCTCGCGCGACACCCTATACTTGGGGATGGCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGc     <  3:62971/136‑1 (MQ=255)
                                                                                                                                  ggCGCGACACCCTATACATGTGGATGTCACGCTATGCCGGCAATTTAATCGGCGCCATTCTGTGTGCCATCCTGATCAGCGCGACGGGACGTTTTGAGGAGCCGTCTGTTCATTCCTTTTTGATTCATTTGGCaga  <  4:332103/136‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                   
CGTTTGCTTTTCCGGCAGCCGCTGTCACATTCGGGGCCGCTATTCTGCTGATTGCTTACGGAGGCGGAGATTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCC‑GAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCATTCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGA  >  CP006881/3723359‑3723623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A