Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F57 I0 R4 226 68.5 3221688 95.0% 3060603 125.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,724,467 T→C 100% K120K (AAA→AAG)  U712_19200 ← SacPA operon antiterminator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,724,4670TC100.0% 338.8 / ‑6.6 94K120K (AAA→AAG) U712_19200SacPA operon antiterminator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (52/41);  minor base G (0/1);  total (52/42)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGAAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCGTATTCTTTTTTATAGAGCGCTTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCAGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCCCCTTCCGCATAGCTG  >  CP006881/3724332‑3724602
                                                                                                                                       |                                                                                                                                       
ctcCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCGCACAGGCCGATCTCATAATCTTATTTATAGAGCGCatt                                                                                                                                       >  8:40136/1‑138 (MQ=255)
ctcCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCctt                                                                                                                                       >  6:316317/1‑138 (MQ=255)
ctcCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCctt                                                                                                                                       >  3:341354/1‑138 (MQ=255)
ctcCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCctt                                                                                                                                       >  3:15930/1‑138 (MQ=255)
ctcCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTACATCTTCAGGCAGAGACCCGCCCAATGTCGCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGGGCcttt                                                                                                                                      >  6:246459/1‑139 (MQ=255)
     catccatcTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTAtct                                                                                                                                  >  3:360847/1‑138 (MQ=255)
          atcTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATgca                                                                                                                            <  1:338164/139‑1 (MQ=255)
          atcTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATgca                                                                                                                            <  4:15930/139‑1 (MQ=255)
          atcTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATgca                                                                                                                            <  1:378084/139‑1 (MQ=255)
           tcTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATgcag                                                                                                                           >  2:260347/1‑139 (MQ=255)
           tcTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATgcag                                                                                                                           >  6:157555/1‑139 (MQ=255)
           tcTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGACTTTATCTCATgcag                                                                                                                           >  4:620/1‑139 (MQ=255)
           tcTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTATTTTTTATTGAGCGCCTTTATCTCATgcag                                                                                                                           >  8:64874/1‑139 (MQ=255)
             ttCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATgcagc                                                                                                                          >  8:98730/1‑138 (MQ=255)
             ttCGCCGTATGGATGTGAAGGGCAATATAACCCGCGTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACATGCCGATCTCATAGTCTTTTTTATAGAGCGCCGTTATCTAATgcagc                                                                                                                          >  2:341058/1‑138 (MQ=255)
               cGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATgcagca                                                                                                                         <  2:403194/137‑1 (MQ=255)
                   gTATGGATGTGAAGTGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTAt                                                                                                                   <  2:361919/139‑1 (MQ=255)
                          tgtgAAGGGCAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGcac                                                                                                            <  4:341354/139‑1 (MQ=255)
                                  gCAATATAACCCGCTGCATCTTCAGGCAGAGACACGCCCAATGTCTCTTATACATGTCCGATCGCCGACAGGCCGATCTCCAATTCTTTTTTATAGAGCGCCGTTATCTCATGCAGCAATTTATTCTGCACAAGCAGcc                                                                                                    <  7:254403/139‑1 (MQ=255)
                                   cAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGccc                                                                                                   >  8:143403/1‑139 (MQ=255)
                                   cAATATAACCCGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGcc                                                                                                    >  8:215809/1‑138 (MQ=255)
                                           cccGCTTCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGAGCCTTTATCTCATGCAGCATTTTATTCTGCACAAGACGCCCATTTTGat                                                                                           >  4:17096/1‑138 (MQ=255)
                                                ttCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATgca                                                                                                                            <  3:349569/101‑1 (MQ=255)
                                                ttCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATgca                                                                                                                            >  4:349569/1‑101 (MQ=255)
                                                ttCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGc                                                                                                              <  2:172938/115‑1 (MQ=255)
                                                ttCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGc                                                                                                              >  1:172938/1‑115 (MQ=255)
                                                ttCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCtt                                                                                      >  1:364901/1‑139 (MQ=255)
                                                ttCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTATATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCtt                                                                                      >  8:332350/1‑139 (MQ=255)
                                                ttCATCTTCAGGCAGAGACACGCCCAATGTCTCTTTTACATGACCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCtt                                                                                      >  3:177702/1‑139 (MQ=255)
                                                ttCATCTTCAGGCAGAGACACGCCCAATCTCTCTTTTACATTTCCGATCGCCCACAGGCCGATCTCATAATCTTTTTTATAGAGCGCCATAAAATAATTCAGCAATTTATAAAGCACAAGCAGCCCAAATTCAATCCta                                                                                      >  2:189022/1‑138 (MQ=255)
                                                        cAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGa                                                                                  <  8:11673/135‑1 (MQ=255)
                                                        cAGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCg                                                                               <  2:364901/138‑1 (MQ=255)
                                                         aGGCAGCGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGTTCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCa                                                                             <  1:189022/139‑1 (MQ=255)
                                                         aGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCa                                                                             <  7:143403/139‑1 (MQ=255)
                                                         aGGCAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCa                                                                             <  4:95399/139‑1 (MQ=255)
                                                          ggcagagACACGCCCAATGTCTCTTTTACATGTACGATCGCACACAGGACGATCTCATATTCTTTTTTATAGAGAGCCTTTATCTCATGCAGCAATTTATTCTGAACAAGCAGCCCATTTTGAATCCTTTCGATCGCaa                                                                            <  5:231876/136‑1 (MQ=255)
                                                               atacacGACAAATGTCTATTTTACATGTACGATCGCCCAAAGGCCTATCTCATATTCTTTTTTATAGAGAGCCTTTATCTCATGAAGCAATTTATTCTGAACAAGCAGCCCATTTTGAATCCTTTATATCGCAAAGGa                                                                        >  6:231876/3‑138 (MQ=255)
                                                                gccacGCCCAATGTCTCTTTTACATGTCCGATCGACCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGGAATTTATACTGGACAAGCAGGCCATTTTGAATCCTTTCGATCGCAAACGACa                                                                      <  1:161933/137‑1 (MQ=255)
                                                                gaCACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGAc                                                                       >  2:133605/1‑138 (MQ=255)
                                                                gaCACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACa                                                                      <  3:62548/139‑1 (MQ=255)
                                                                     gCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATgg                                                                 <  3:177545/139‑1 (MQ=255)
                                                                     gCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATgg                                                                 >  7:175341/1‑139 (MQ=255)
                                                                     gCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAAGTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATgg                                                                 >  3:209764/1‑139 (MQ=255)
                                                                     gCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCATTATCTCATGACGCAATTTATTCTGCACAAGCAGCACAGTTTGAATCATATCGATCGCAAAGGACAAATgg                                                                 >  1:111899/1‑139 (MQ=255)
                                                                               tctTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAgcg                                                       >  7:236162/1‑139 (MQ=255)
                                                                               tctTTTACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGAAAAATGGTCGGAAAgcg                                                       >  7:270492/1‑139 (MQ=255)
                                                                                 ttttACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAgcgc                                                      >  1:161156/1‑138 (MQ=255)
                                                                                 ttttACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAgcgc                                                      >  8:329118/1‑138 (MQ=255)
                                                                                 ttttACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAgcgc                                                      >  1:337900/1‑138 (MQ=255)
                                                                                 ttttACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAgcg                                                       <  1:133605/137‑1 (MQ=255)
                                                                                 ttttACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAgcg                                                       <  5:157555/137‑1 (MQ=255)
                                                                                    tACATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGat                                                   <  3:620/138‑1 (MQ=255)
                                                                                    tACATGCCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGat                                                   <  4:177702/138‑1 (MQ=255)
                                                                                     aCATGTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGatat                                                 >  4:35571/1‑139 (MQ=255)
                                                                                         gTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAAt                                             >  4:185432/1‑139 (MQ=255)
                                                                                         gTCCGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAAt                                             >  6:359278/1‑139 (MQ=255)
                                                                                           ccGATCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCACCAATTTATTCTGCACAAGCAGCCCATTTTGATTCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAAtgt                                           >  5:262562/1‑139 (MQ=255)
                                                                                              aTCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCa                                                                                                                                >  6:42221/1‑51 (MQ=255)
                                                                                              aTCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCa                                                                                                                                <  5:42221/51‑1 (MQ=255)
                                                                                              aTCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCa                                                                             >  2:314035/1‑102 (MQ=255)
                                                                                              aTCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCa                                                                             <  1:314035/102‑1 (MQ=255)
                                                                                              aTCGCCCACAGGCCGATCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGAt                                        >  7:261601/1‑139 (MQ=255)
                                                                                                       aGGCCGATCTCATATTCTTTTTTATCGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAgcg                               <  6:140001/139‑1 (MQ=255)
                                                                                                             aTCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCa                                                                             <  6:341937/87‑1 (MQ=255)
                                                                                                             aTCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCa                                                                             >  5:341937/1‑87 (MQ=255)
                                                                                                             aTCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAgcg                                                       >  1:371447/1‑109 (MQ=255)
                                                                                                             aTCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAgcg                                                       <  2:371447/109‑1 (MQ=255)
                                                                                                             aTCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGcgccg                         >  4:118709/1‑139 (MQ=255)
                                                                                                             aTCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGcgccg                         >  4:268356/1‑139 (MQ=255)
                                                                                                             aTCTCATATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGcgccg                         >  8:281171/1‑139 (MQ=255)
                                                                                                             aTCTCATATTCTTTTTAATAGAGCGCCGTTATCTCATGCAGCAATTTATTCTGCCAAAGCAGCCCAGTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATTTGATCGCTCAGCGGcgccg                         >  6:209934/1‑139 (MQ=255)
                                                                                                             aTCTCAAATTCTTTTTTAAAGAGCGCCTTTATCTCATGCAGCAATATATTCTGCACAAGCAGCCCAAATTGAAACAATTCAAACGCAAAGGACAAATGGTCGGAAAGAGCGATATGAATGTGATCACACATCGGccccg                         >  8:219827/1‑139 (MQ=255)
                                                                                                                   tATTCTTTTTTATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCt                   >  4:195860/1‑139 (MQ=255)
                                                                                                                        ttttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTctcc               >  7:301074/1‑138 (MQ=255)
                                                                                                                          ttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACa                                                                      <  4:171079/81‑1 (MQ=255)
                                                                                                                          ttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACa                                                                      >  3:171079/1‑81 (MQ=255)
                                                                                                                          ttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTctcc               <  7:329118/136‑1 (MQ=255)
                                                                                                                          ttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTc            >  5:51599/1‑139 (MQ=255)
                                                                                                                             tatataGGGCGTTTATGTCATGAAGCAATTTATTCTGCACAATCAGCCCATTTTGTTTCCTTTCGATCGCAAAGGAAAAATGGTCGGAAAGGGCGATTTGATTGTGTTCGGTCTGCGGCGCCGCGAGCTCTCCTTCCg          <  6:262562/138‑1 (MQ=255)
                                                                                                                               taGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa        <  7:281171/138‑1 (MQ=255)
                                                                                                                               taGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa        <  3:195860/138‑1 (MQ=255)
                                                                                                                               taGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGGCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa        <  5:231025/138‑1 (MQ=255)
                                                                                                                                 gagCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCaa                                                                            <  4:254188/68‑1 (MQ=255)
                                                                                                                                 gagCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCaa                                                                            >  3:254188/1‑68 (MQ=255)
                                                                                                                                 gagCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAg     <  8:301074/139‑1 (MQ=255)
                                                                                                                                  agCGCCTTTATCTGAGGCAGAAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGAACGCAAAGCACAAATGGTCGGAAAGCGCGATATGATTGTGAGCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGc    <  1:383635/139‑1 (MQ=255)
                                                                                                                                  agCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGTATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGc    <  5:36723/139‑1 (MQ=255)
                                                                                                                                  agCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGc    <  5:359278/139‑1 (MQ=255)
                                                                                                                                    cgcCTTTATCTCTTGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGATAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTGCCGCATAGCt   >  8:355307/1‑138 (MQ=255)
                                                                                                                                    cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAgcg                                                       <  4:249299/86‑1 (MQ=255)
                                                                                                                                    cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAgcg                                                       >  3:249299/1‑86 (MQ=255)
                                                                                                                                    cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGat                                                   <  5:288845/90‑1 (MQ=255)
                                                                                                                                    cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGat                                                   >  6:288845/1‑90 (MQ=255)
                                                                                                                                    cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAgcggc                             >  3:378887/1‑112 (MQ=255)
                                                                                                                                    cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAgcggc                             <  4:378887/112‑1 (MQ=255)
                                                                                                                                    cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCtg  <  3:268356/139‑1 (MQ=255)
                                                                                                                                    cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCt   >  6:329793/1‑138 (MQ=255)
                                                                                                                                    cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCt   >  5:113630/1‑138 (MQ=255)
                                                                                                                                    cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCt   >  3:273290/1‑138 (MQ=255)
                                                                                                                                       |                                                                                                                                       
CTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGAAGAGACACGCCCAATGTCTCTTTTACATGTCCGATCGCCCACAGGCCGATCTCGTATTCTTTTTTATAGAGCGCTTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCAGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCCCCTTCCGCATAGCTG  >  CP006881/3724332‑3724602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A