Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F58 I0 R3 247 66.2 2815674 94.9% 2672074 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,724,831 C→T 100% intergenic (‑5/+35) U712_19200 ← / ← U712_19205 SacPA operon antiterminator/Uncharacterized protein ywcI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,724,8310CT100.0% 190.4 / ‑6.6 63intergenic (‑5/+35)U712_19200/U712_19205SacPA operon antiterminator/Uncharacterized protein ywcI
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (32/28);  minor base G (0/1);  total (32/31)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TTCCACTTTATTCATAGGGATGAGGTCATTTTTCTTTTTTTGAAAAGCGATTCCTGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAGTACTTTATAGATTTTCAAGAGGCTAT‑CTCTCCCGCCAATTAGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCAGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGG  >  CP006881/3724695‑3724963
                                                                                                                                        |                                                                                                                                     
ttCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTa                                                                                                                                     >  4:193212/1‑139 (MQ=255)
ttCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTa                                                                                                                                     >  5:146440/1‑139 (MQ=255)
ttCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTa                                                                                                                                     >  1:164345/1‑139 (MQ=255)
ttCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTa                                                                                                                                     >  2:15785/1‑139 (MQ=255)
   cACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGATTAATACTTTATAGATTTTCAAGAGGTTAt‑ct                                                                                                                                 <  8:102371/139‑1 (MQ=255)
     cTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAt‑ctct                                                                                                                               >  1:129167/1‑139 (MQ=255)
        tATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTccc                                                                                                                            >  2:324611/1‑139 (MQ=255)
          atCATAGGGATCAGATCATTTTTCTTTTTTTGAAAACAGATTCCCGGTCCCATCACGATTTTTTACTGAGCAGCCTCTATTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTAAAGATGTTAT‑CTCTCCCGc                                                                                                                          >  7:269795/2‑139 (MQ=255)
           tCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGc                                                                                                                          <  2:164345/138‑1 (MQ=255)
             aTAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCg                                                                                                                           >  6:326163/1‑135 (MQ=255)
             aTAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCg                                                                                                                           <  5:326163/135‑1 (MQ=255)
                    tGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCtt                                                                                                                >  7:331871/1‑139 (MQ=255)
                    tGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCtt                                                                                                                >  3:275601/1‑139 (MQ=255)
                         tCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGAc                                                                                                           >  3:64773/1‑139 (MQ=255)
                            tttttCTTTTTTTGAAAAGCGATGCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTgg                                                                                                        <  8:294900/139‑1 (MQ=255)
                             ttttCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAACCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTgg                                                                                                        >  5:344820/1‑138 (MQ=255)
                                    tttttGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTAc                                                                                                >  5:146934/1‑139 (MQ=255)
                                     ttttGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTAc                                                                                                <  4:275601/138‑1 (MQ=255)
                                     ttttGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTAc                                                                                                <  6:139300/138‑1 (MQ=255)
                                            aaGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCtttt                                                                                        <  3:110318/139‑1 (MQ=255)
                                                 aTTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCg                                                                                   <  6:146934/139‑1 (MQ=255)
                                                 aTTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCg                                                                                   <  5:153500/139‑1 (MQ=255)
                                                 aTTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCg                                                                                   <  8:231949/139‑1 (MQ=255)
                                                    cccggTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAACCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGcc                                                                                 <  6:344820/135‑1 (MQ=255)
                                                        gTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTa                                                                            <  1:15785/139‑1 (MQ=255)
                                                                 cGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCgg                                                                   >  6:195064/1‑139 (MQ=255)
                                                                 cGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTGAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGAGCGCCATGTAAAGATGCgg                                                                   >  2:124682/1‑139 (MQ=255)
                                                                   aTTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGc                                                                 <  8:331871/139‑1 (MQ=255)
                                                                   aTTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTATATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACAGCCATGTAAAGATGCGGGc                                                                 <  4:133587/139‑1 (MQ=255)
                                                                   aTTTTTTCCAGATCATACTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGATAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAACGATGCGGGc                                                                 <  6:217506/139‑1 (MQ=255)
                                                                    ttttttCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGc                                                                 <  8:65058/138‑1 (MQ=255)
                                                                         tCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGct                                                            <  2:129167/138‑1 (MQ=255)
                                                                         tCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGct                                                            <  6:122128/138‑1 (MQ=255)
                                                                              atcatcCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTCTAGATTTTCAAGAGGTTAT‑CTCTCCCGGCAATTTGCTTTTGACTGGCATTTTACCTCCTTTTGACCTCCATGTAAAGATGCGGGCCCGCtctctc                                                       <  8:298792/138‑1 (MQ=255)
                                                                              atcatcCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCg                                                                                   >  1:248790/1‑110 (MQ=255)
                                                                              atcatcCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCg                                                                                   <  2:248790/110‑1 (MQ=255)
                                                                              atcatcCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCtctctc                                                       <  7:200576/138‑1 (MQ=255)
                                                                              atcatcCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTcc                                                      >  5:248601/1‑139 (MQ=255)
                                                                                        tttATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGct                                                            <  1:136733/123‑1 (MQ=255)
                                                                                        tttATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGct                                                            >  2:136733/1‑123 (MQ=255)
                                                                                          tattaAAGCCGCATTGATGTTTAAAACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCCTGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGa                                           <  1:87425/138‑1 (MQ=255)
                                                                                           attaAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGAt                                          >  7:170421/1‑138 (MQ=255)
                                                                                                aGCCGCATTGTTGTTTAATACTTTATAGAATTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCGATGTAAAGTTGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTg                                    <  8:299902/139‑1 (MQ=255)
                                                                                                 gCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGCCTGGGATTTTCCATCCTTTAGACCGCCATGTAAAGATCCGGGCCCGCTCTCTCCTTCTTTGGCGATTCTTTg                                    >  7:153947/1‑138 (MQ=255)
                                                                                                 gCCGCATTGTTGATTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTAGCTTTTGACTGGGATTTTACGTCCTTTTGACCGACATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTg                                    >  4:140215/1‑138 (MQ=255)
                                                                                                     cATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGc                               >  3:181944/1‑139 (MQ=255)
                                                                                                     cATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGc                               >  8:155547/1‑139 (MQ=255)
                                                                                                     cATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGc                               <  6:146440/139‑1 (MQ=255)
                                                                                                          ttgttTAATACTTTATAGATTTTCAAGAGG‑TATGCTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACAGCCATGTAAATATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCa                          <  2:137538/139‑1 (MQ=255)
                                                                                                            gttTAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCaa                         >  1:47710/1‑138 (MQ=255)
                                                                                                             tttAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATg                                                                      <  2:209718/92‑1 (MQ=255)
                                                                                                             tttAATACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATg                                                                      >  1:209718/1‑92 (MQ=255)
                                                                                                               taatACTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCTCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACa                      >  1:311721/4‑138 (MQ=255)
                                                                                                                    cTTTATAGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACAtcttct                >  1:5284/1‑139 (MQ=255)
                                                                                                                       tataGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGcc                                                                                 >  3:236639/1‑71 (MQ=255)
                                                                                                                       tataGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGcc                                                                                 <  4:236639/71‑1 (MQ=255)
                                                                                                                       tataGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTTCAAACATCTTCtttt             >  6:328915/1‑139 (MQ=255)
                                                                                                                       tataGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCa                          >  3:83389/1‑126 (MQ=255)
                                                                                                                       tataGATTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCa                          <  4:83389/126‑1 (MQ=255)
                                                                                                                            aTTTTCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATaat        >  8:295033/1‑138 (MQ=255)
                                                                                                                              tttCAAGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAgc      >  7:266139/1‑139 (MQ=255)
                                                                                                                                  aaGAGGTTAT‑CTCTCCCGCCAATTTGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCgcgg  <  2:47710/139‑1 (MQ=255)
                                                                                                                                  aaGAGGGAAT‑CTCTCCCGCCAATTGGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGcgcg   <  1:324611/138‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                     
TTCCACTTTATTCATAGGGATGAGGTCATTTTTCTTTTTTTGAAAAGCGATTCCTGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAGTACTTTATAGATTTTCAAGAGGCTAT‑CTCTCCCGCCAATTAGCTTTTGACTGGGATTTTACCTCCTTTTGACCGCCATGTAAAGATGCGGGCCAGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGG  >  CP006881/3724695‑3724963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A