Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F56 I15 R1 126 117.1 3948514 95.2% 3758985 126.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,724,587 C→T G80G (GGG→GGA)  U712_19200 ← SacPA operon antiterminator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,724,5870CT98.2% 321.6 / NA 112G80G (GGG→GGA) U712_19200SacPA operon antiterminator
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (55/54);  minor base G (2/0);  total (58/54)
Fisher's exact test for biased strand distribution p-value = 4.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 114 total aligned reads displayed.

TTTTATAGAGCGCTTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCAGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCCCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCAATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTAAACTTTTCATTCTCGTCGTGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGGT  >  CP006881/3724454‑3724720
                                                                                                                                     |                                                                                                                                     
ttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTc                                                                                                                                  >  7:166879/1‑139 (MQ=255)
     taGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa                                                                                                                              <  6:97831/138‑1 (MQ=255)
     taGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTGCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa                                                                                                                              <  1:43217/138‑1 (MQ=255)
     taGAGCGCCTTTATCTCATGCACCAATTTATTCTGCACAAGCAGCAAATTTTGATTCCTTTCTATCGCAATGGACTAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGGGCGGCGAGCTCTCCTTCCGCa                                                                                                                              <  1:75327/138‑1 (MQ=255)
        agCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGc                                                                                                                          <  3:205540/139‑1 (MQ=255)
        agCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCCAGCTCGCCTTCCGCAAAGc                                                                                                                          >  2:75327/1‑139 (MQ=255)
          cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCg                                                                                                                                <  4:136196/131‑1 (MQ=255)
          cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCg                                                                                                                                >  3:136196/1‑131 (MQ=255)
          cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCtg                                                                                                                        >  3:319759/1‑139 (MQ=255)
          cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCt                                                                                                                         >  5:115079/1‑138 (MQ=255)
          cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCt                                                                                                                         >  7:274706/1‑138 (MQ=255)
          cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCt                                                                                                                         >  4:184737/1‑138 (MQ=255)
             ctttATCTCTAGCATCAATTTATTCTCCACAAGCAGCCCATTTATAATCCTTTCGATCGCAAAGGACAAAAGGTCGGAAAGCGCGATATGAATGTTATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCtgatg                                                                                                                     <  1:73920/138‑1 (MQ=255)
             atttATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGTTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCtgatg                                                                                                                     <  5:244070/138‑1 (MQ=255)
                tATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTgatgat                                                                                                                   <  7:367318/138‑1 (MQ=255)
                      aTGCAGCAATTTATTCTGCACAATCAGCCCATTTTTAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGAGATCGATCAGCGCCGCCGCGCGCGCTCCGTACGCAAAGCTGATTATATACta                                                                                                             >  1:461412/1‑137 (MQ=255)
                      aTGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCt                                                                                                              <  4:319759/137‑1 (MQ=255)
                      aTGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCt                                                                                                              >  5:27811/1‑137 (MQ=255)
                       tGCAGCAATTTATTCTGCTCAAGCAGTCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAg                                                                                                           >  2:429672/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAACGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGCGGTCTCCTTCCGCATAGCTGATGCTATCCTccg                                                                                                           >  3:335224/1‑137 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGc                                                                                                                               >  8:200726/1‑119 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGc                                                                                                                               <  7:200726/119‑1 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCt                                                                                                              >  6:111235/1‑136 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCt                                                                                                              <  5:111235/136‑1 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAg                                                                                                           >  7:179901/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAg                                                                                                           >  1:320117/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAg                                                                                                           >  6:192733/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAg                                                                                                           >  8:227052/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCAAAGCGGATGATATCCTCAg                                                                                                           >  3:179305/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCATTCCGCATAGCTGATGATATCATCAg                                                                                                           >  8:306797/1‑139 (MQ=255)
                         cagcaATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCt                                                                                                         <  6:115079/139‑1 (MQ=255)
                          agttaTTTATTCTGCACAAGCAGCCAATTTTGAATCCTTTCGATCGCATAGGACAATTGGTCTGAATGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCATCAGCTa                                                                                                        <  1:152491/135‑1 (MQ=255)
                           gcaATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTAt                                                                                                       <  3:255600/139‑1 (MQ=255)
                            caATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTAtt                                                                                                      >  8:445181/1‑139 (MQ=255)
                                   ttCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCtata                                                                                                <  2:320117/138‑1 (MQ=255)
                                   ttCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCtata                                                                                                <  8:274706/138‑1 (MQ=255)
                                       gCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTAt                                                                                                       >  1:217337/1‑127 (MQ=255)
                                       gCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTAt                                                                                                       <  2:217337/127‑1 (MQ=255)
                                       gCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGctc                                                                                           >  2:459152/1‑139 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCTGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGctcc                                                                                          >  8:453496/1‑139 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGCGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGctcc                                                                                          >  5:149954/1‑139 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa                                                                                                                              <  2:210220/103‑1 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa                                                                                                                              >  1:210220/1‑103 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGctcc                                                                                          <  6:67971/139‑1 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGc                                                                                             <  2:255137/136‑1 (MQ=255)
                                         acaAGCAGCCCATTTTGAATACTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGAGATCGCACAGCGGCCCCGCGAGCTCACCTACCGCATACCTGAAGATAAAATCAGCGATTACTatattatac                                                                                          >  3:159395/1‑133 (MQ=255)
                                             gcagtCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCgg                                                                                     <  1:429672/139‑1 (MQ=255)
                                                gcCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGc                                                                                             >  7:481234/1‑128 (MQ=255)
                                                gcCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGc                                                                                             <  8:481234/128‑1 (MQ=255)
                                                  ccATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTctcc                                                                                                                                     <  2:351930/86‑1 (MQ=255)
                                                  ccATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTctcc                                                                                                                                     >  1:351930/1‑86 (MQ=255)
                                                     ttttGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTTTTTCTATATGCTCCTCCGGCAGTGttt                                                                             >  6:54082/1‑139 (MQ=255)
                                                     ttttGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGc                                                                                    <  4:31139/132‑1 (MQ=255)
                                                     ttttGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGc                                                                                    >  3:31139/1‑132 (MQ=255)
                                                     ttttGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGttt                                                                             >  6:494808/1‑139 (MQ=255)
                                                           atgcTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGa                                                                       <  3:424436/136‑1 (MQ=255)
                                                           aTCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGa                                                                       >  2:84585/1‑139 (MQ=255)
                                                           aTCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGa                                                                       <  6:162245/139‑1 (MQ=255)
                                                                  cGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCGCTCCTTCCGCATAGCTgatgat                                                                                                                   >  8:177431/1‑88 (MQ=255)
                                                                   gATCGCAAAGGACAAATTGTCGGAAAGCGCGATATGAATGTGAGCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGtttg                                                               <  5:11981/139‑2 (MQ=255)
                                                                     tCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCGCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTgaa                                                             <  2:7771/139‑1 (MQ=255)
                                                                        cAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACtt                                                          >  4:43387/1‑139 (MQ=255)
                                                                        cAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACtt                                                          >  2:44692/1‑139 (MQ=255)
                                                                                  aTGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCtcg                                                >  2:324771/1‑139 (MQ=255)
                                                                                  aTGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGGTTGCAGGATTTGTTTGAACTTTTCATTCtcg                                                >  7:224230/1‑139 (MQ=255)
                                                                                       cggAACGCGGGATATGAATGTGCTCGCGGCGCGGCGCCGGGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGGAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCtcgtcgcg                                           <  5:72020/137‑3 (MQ=255)
                                                                                       cggAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCtcgtcgcg                                           <  5:100518/137‑3 (MQ=255)
                                                                                       cggAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCtcgtcgcg                                           >  7:121534/3‑137 (MQ=255)
                                                                                              cgcgATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATcc                                                                                                               >  4:387224/1‑64 (MQ=255)
                                                                                              cgcgATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATcc                                                                                                               <  3:387224/64‑1 (MQ=255)
                                                                                              cgcgATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACa                                    <  8:166879/139‑1 (MQ=255)
                                                                                              cgcgATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACa                                    <  3:43387/139‑1 (MQ=255)
                                                                                                cgATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTGTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTAAATGCTCGTCAGGCAGTGTTTGCAGGATGTGTTTGAAATTTTGATTCTAGTCGCGCAccgcaa                                   >  8:107932/1‑133 (MQ=255)
                                                                                                cgATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACaaa                                  >  5:319295/1‑139 (MQ=255)
                                                                                                 gATTTGATTGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATTTCCTGAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGATCTTTTCATTCTCGTGGCGCACGACATAg                                 <  4:159395/139‑1 (MQ=255)
                                                                                                 gATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAg                                 <  7:445181/139‑1 (MQ=255)
                                                                                                   tatGAATGTGATCGCGCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGAt                               <  5:301785/139‑1 (MQ=255)
                                                                                                        aTGTGCTCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCtttt                          <  3:491266/139‑1 (MQ=255)
                                                                                                        aTGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTTTTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCCCGACAAAGATCtttt                          >  3:220705/1‑139 (MQ=255)
                                                                                                        aTGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCtttt                          <  5:494808/139‑1 (MQ=255)
                                                                                                        aTGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCtttt                          <  2:52504/139‑1 (MQ=255)
                                                                                                             caggCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACt                     <  1:187646/136‑1 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGCGCTCTCCTTCCGCATAGCTGATGATGTGCTCAGCGATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGAGTTGTTTGCACGTTTCATTCTCGTGGCGCACGGCAAAGATCTTTTccgcg                     >  6:421392/1‑136 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGCGCTCTCCGTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTGCCACt                     >  1:348890/1‑139 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGc                                                                                             >  4:126962/1‑67 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGc                                                                                             <  3:126962/67‑1 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACt                     >  5:429713/1‑139 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACt                     >  5:160303/1‑139 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTATATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCAca                     >  6:201921/1‑138 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCGTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGGGTTTGGAGGATTTGTTTGTACTTTTCATTCTCGGCGCGCACGCCAACGATCTTTTCCCCt                     >  1:459213/1‑139 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCATCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCACCACCGGCAGTGTTTGCAGGAATTGTTTGAACATTTCATTCTCGTCGCGCAAGACAAAGATCttttaccat                     >  6:16309/1‑134 (MQ=255)
                                                                                                                 cgcAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTAt                 <  4:190505/137‑1 (MQ=255)
                                                                                                                 cTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGa                                                                       <  7:276554/85‑1 (MQ=255)
                                                                                                                 cTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGa                                                                       >  8:276554/1‑85 (MQ=255)
                                                                                                                 cTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTAt                 <  5:221165/139‑1 (MQ=255)
                                                                                                                      acaggccgcGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATa            <  1:223026/135‑1 (MQ=255)
                                                                                                                           ccgcGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCAGGCCAAAGATCTTGTCCACTGTATTCTTAggctt       >  2:187646/1‑136 (MQ=255)
                                                                                                                           ccgcGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAg                                 <  7:66801/113‑1 (MQ=255)
                                                                                                                           ccgcGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAg                                 >  8:66801/1‑113 (MQ=255)
                                                                                                                                aGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAgat  <  1:44692/139‑3 (MQ=255)
                                                                                                                                     |                                                                                                                                     
TTTTATAGAGCGCTTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCAGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCCCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCAATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTAAACTTTTCATTCTCGTCGTGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGGT  >  CP006881/3724454‑3724720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A