Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F56 I15 R1 126 117.1 3948514 95.2% 3758985 126.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,725,237 A→G intergenic (‑69/‑460) U712_19205 ← / → U712_19210 Uncharacterized protein ywcI/Minor extracellular protease vpr

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,725,2370AG86.2% 137.8 / ‑1.6 58intergenic (‑69/‑460)U712_19205/U712_19210Uncharacterized protein ywcI/Minor extracellular protease vpr
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (38/12);  minor base C (0/8);  total (38/20)
Fisher's exact test for biased strand distribution p-value = 6.57e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑T‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAACCAACTAGTTTTTAG  >  CP006881/3725114‑3725363
                                                                                                                                  |                                                                                                                              
cccAGTTCATCAAAAAGACCATCCCCACCCGTAAAGATACAAGCAAACGTTTAATAGAAAAACATCCCTCCGCTTGTTTTTGTCGGGCAGC‑CGT‑TT‑A‑A‑TGAGCCCGGGTTC‑GATGCCGCAGCGCGCAAGAAAAGCCGGc                                                                                                                  >  2:157492/1‑139 (MQ=255)
     ttCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCCGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TAAGCCCCCGCCCGCAAGCAAAGACCGCCGagt                                                                                                             >  6:134222/1‑137 (MQ=255)
     ttCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCGTTTTGGCAGGCCGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCCGCCCGCAAGAAAAGACGGCCGagt                                                                                                             >  3:42703/1‑137 (MQ=255)
     ttCATCAAAAAGACCATCCACACCCGAAAAGATACAAGCAAACGTTTCATAGAAAACCATCCCTCCGCTACTTTTTGGCAGGCAGC‑CGT‑TT‑T‑A‑GCAGCCCCTTTTC‑ACACCCGCCCCCCGCAACAAAACACGGCCgctg                                                                                                             >  1:213040/1‑136 (MQ=255)
        aacaAAAAGACCATCCACACCCGTAAATATACAAGCAAACGTTTCATAGATAAACATACATCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑TCAGACCGATTTC‑TCAGCCGCCGCCCGCAAGCAAAAACGGACCAtttag                                                                                                          >  4:202477/3‑137 (MQ=255)
         tcaAAAAGACCATCCCCACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCGGC‑C‑TGTT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCGGCCCGCAAGAAAAGACGGCCGAtttctt                                                                                                         >  1:471978/1‑139 (MQ=255)
          caAAAAGACCATCCACCCCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTTGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TAAGCCGCAGCCCGCAAGAAAAGACGGGCGctttcttt                                                                                                        >  8:162376/1‑139 (MQ=255)
               accccAACCACCCCCTAAAACAAACAACCAACCGTTAAATATAAAAACATCCCACCGCTGTTTTTTGGCAGGCAGC‑CTT‑TT‑T‑C‑CCAGCCCGTTTTC‑TCCGCCGCACCCCCAAAGAAAAGACGGCCGATTTCTTTTCTCg                                                                                                   <  1:448352/136‑1 (MQ=255)
                 aCCCTCCACACCCGTAAACAAACAACCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCCGC‑CTT‑TT‑T‑A‑GCACCCCGTTTTC‑TCAGCCGCCGCCCGCAATAAACCACGGCCGATTTCTTTTCTCGCa                                                                                                 <  5:79970/139‑1 (MQ=255)
                  ccATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCa                                                                                                 >  1:23318/1‑138 (MQ=255)
                  ccATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CAT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTGTTTTATCgga                                                                                                 >  1:405837/1‑136 (MQ=255)
                             cGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTGCTTTTTGGCCGGCAGC‑C‑T‑TT‑TAA‑GCAGCCCGTTTTC‑ACACCCGCCGCCCGCAAGAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc                                                                                     <  3:390153/139‑1 (MQ=255)
                               tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTggcggcgc                                                                                     >  8:112867/1‑135 (MQ=255)
                               tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc                                                                                     >  4:87646/1‑137 (MQ=255)
                               tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCATTTCTCGCAAAAAAGCGGctc                                                                                     >  3:388313/1‑137 (MQ=255)
                                    aTACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CGT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATGTGTTTTGTCGCAAACGAGCGGCGCTatcca                                                                               >  3:257830/1‑134 (MQ=255)
                                    aTACAAGCAAACGTTTAATAGAAAAACATCCCTACGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCCAGAAAAGACCGACGATTTCTTTTCTCGAAAACTAGCGGCTATAGCaa                                                                               >  7:395922/1‑138 (MQ=255)
                                      aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGCCGGCCGAGTTCGTTTCTCGCAAACTAGCGGCTCTAGCAAAAc                                                                            >  8:315781/1‑139 (MQ=255)
                                      aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCaaaa                                                                             >  1:115819/1‑138 (MQ=255)
                                      aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTCTTTTCTCGCCAACTAGCGGCTCTAGCAAAAc                                                                            >  1:286398/1‑139 (MQ=255)
                                      aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTCTTTTCTCGCAAACTAGCGGCTCTAGCaaaa                                                                             >  2:128920/1‑138 (MQ=255)
                                         agaaaaCTTTTAATATAAAAACATCCGTCCGATTATTTTTGCCCGGCCCCTT‑T‑TT‑T‑A‑GCACCCTGTTTTC‑CCCCCCGCAGCCCCAAATAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCa                                                                         <  2:23318/136‑1 (MQ=255)
                                         accAAACGTTTCATACAAAAACACCCCTCCGCTTCTTTTTGCCAGGCAGCTT‑T‑TT‑T‑A‑GCCGCCCGTTTTC‑ACCGCCGCCGCCCGCAAAAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCa                                                                         <  1:111779/137‑1 (MQ=255)
                                          gaaaccGTTGCATCGAAAAACATCCCTCGGAGTTTTTTTGGCAGCCCGC‑CTT‑TT‑T‑A‑GCGGCCGGTTTTC‑TCACCCGCAGCCCGCAAGAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                        <  5:129550/134‑1 (MQ=255)
                                          gCAACCGTTTCATAGAAAACCATCCCCCCGCTTCTTTTTGGCAGCCAGC‑CTT‑TT‑T‑C‑GCAGCCCGTTTTC‑TCCCCCGCACCCCGCAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                        <  8:156380/139‑1 (MQ=255)
                                          gCAAATTTTTAATATAAAAACATCCGTCCGTTTATTTTTGGCGTGCTTCTT‑T‑TT‑T‑T‑GCCGCGGGTTTTG‑TCACCCGCCGCCCGCAATAAACCACGGCCGTTTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                        <  8:363693/139‑1 (MQ=255)
                                          ccAACCGTTTCATAGAAAAACAACCCTCCGCTTCTTTTGGCCCGGCCGC‑CTT‑TT‑T‑C‑GCCGCCCGTTTTC‑TCCCCCGCCGCCCGCAAGAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                        <  5:185121/138‑1 (MQ=255)
                                             aaCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACCGCCGCTTTCTTTTCTCGCAAACAAGCGGCTCGTGCAACACTCATGAc                                                                     >  4:418331/1‑139 (MQ=255)
                                              ccGTTTCATATAAAAACACCCCTCCGCTTCTTTTTGGCAGGCCGC‑CTT‑TT‑T‑A‑CCAGCCCGTTTTC‑TCCCCCGCAGCCCCAAACAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                    <  3:473223/138‑1 (MQ=255)
                                              ccGTTTCATACAAAAACATCCCTCCTATTTTTTTTGCCAGGCCCCTT‑T‑TT‑T‑A‑CAAGCCGTTTTTC‑TCCGCCCCCGCCCCAAATAACCCACGGCCTATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                    <  2:115819/138‑1 (MQ=255)
                                              aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGCCGGCCGAGTTCTTTTCTCGCCAACTACCGGCTCTAGCAAAACTCATGAcg                                                                    >  5:148927/1‑138 (MQ=255)
                                              aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CGT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCGAGCGAAACTCAAGaat                                                                    >  7:222427/1‑137 (MQ=255)
                                              aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CGT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCACCCCGCAAGAAAAGACGGCCGATTTCTTTAATCGCAAACTAGCGGCTCAAGCAAAACACATgcc                                                                     >  3:221877/1‑136 (MQ=255)
                                              aCGTTTCAAATAAAAACATCCCCCCTCTTCTTTTTGCCAGGCCGC‑C‑T‑TT‑TAA‑GCCGCCCTTTTTC‑ACAGCCCCCCCCCCCAACAAAACACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                    <  3:134893/139‑1 (MQ=255)
                                              aCGTTTAATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCCGCCGCCGCCCGAAATAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                    <  1:86358/139‑1 (MQ=255)
                                              aCGTTCCATATAAAAACAGCCCTCCGCTGCTTTTTGCCCGGCAGC‑C‑T‑TTAT‑C‑GCCCCCCGTTTGC‑CCCGCCGCAGCCCGAAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                    <  6:241161/139‑1 (MQ=255)
                                               cGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa                                                                                >  8:470645/1‑126 (MQ=255)
                                               cGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa                                                                                <  7:470645/126‑1 (MQ=255)
                                               cGTTTAATACAAAAACAACCCTCCGATTCTTTTTGGCAGCCCCCTT‑T‑TT‑T‑C‑GCAGCCCGTTTTC‑TCCGCCCCCCCCCCCAACAAATCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGActc                                                                   <  7:240884/139‑1 (MQ=255)
                                                  ttCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCCCAGCCCGCAAGAAAAGACGGCCGATTTCATTTATCGCAAACTAACGGCTCTAGCAAAAATCAAGACTCAAt                                                                >  7:363693/1‑139 (MQ=255)
                                                   tCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCGATg                                                               >  8:80152/1‑139 (MQ=255)
                                                          aaaaCATCCCTCCGCTTCTTTTTGGCCGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAACACGGCCGATTTCGTTTGACGCAAACAACCGGCGCTAGCCAAACGAATGCCGCTATGGTAGAcc                                                        >  4:285350/1‑139 (MQ=255)
                                                                             ttttGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTg                                     >  2:137935/1‑139 (MQ=255)
                                                                               tgggcaggcaGC‑CTT‑TT‑T‑A‑GCACCCCGTTTTC‑TCACCCGCCCCCCCCAACAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGt                                    <  4:199793/136‑1 (MQ=255)
                                                                                tGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGCCGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAATCATGCCTCGATGATAGCACGTGGTAAGAGAATTATTTGtaa                                  >  7:488206/1‑137 (MQ=255)
                                                                                 gccaggcagC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑GCAGCCGCAGCCGCCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTca                                  <  2:22755/136‑1 (MQ=255)
                                                                                     ggcagC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAata                             >  3:201255/1‑139 (MQ=255)
                                                                                       cagC‑C‑T‑TT‑T‑ACGCCG‑CCGTTTTCGTCCGCCCCCGCCCGCACTAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATg                           <  7:112327/139‑1 (MQ=255)
                                                                                                         agcCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAAcc               >  5:424764/1‑138 (MQ=255)
                                                                                                          gcCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                    >  5:331814/1‑84 (MQ=255)
                                                                                                          gcCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                    <  6:331814/84‑1 (MQ=255)
                                                                                                          gcCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAACCaa             >  3:239305/1‑139 (MQ=255)
                                                                                                          gcCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAACCaa             >  7:112969/1‑139 (MQ=255)
                                                                                                           cccGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAACCAAc            >  7:303438/1‑139 (MQ=255)
                                                                                                           cccGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAATCTATGATAGACCGTGGAAAGAGAAATCTTTGTCACAAAATGAGTGAAAAAACCaa             >  2:297513/1‑138 (MQ=255)
                                                                                                               ttttC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGAAAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAACCAAc            >  2:297940/1‑135 (MQ=255)
                                                                                                                       aGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGAGAGCCCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAACCAACTAGGTTTTAg  >  8:413517/1‑138 (MQ=255)
                                                                                                                            cAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                    >  8:260838/1‑67 (MQ=255)
                                                                                                                                  |                                                                                                                              
CCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑T‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAACCAACTAGTTTTTAG  >  CP006881/3725114‑3725363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A