Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,183,967 C→T E52E (GAG→GAA)  U712_10940 ← Hypothetical Protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,183,9670CT100.0% 281.3 / NA 89E52E (GAG→GAA) U712_10940Hypothetical Protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (63/26);  total (63/26)

TCCTGCTGTTTATTTAATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAACTCTGCCTGCTCTACAAAATGAACCTTTTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTT  >  CP006881/2183836‑2184094
                                                                                                                                   |                                                                                                                               
tCCTGCTGTTTATTTAATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTcagcct                                                                                                                          >  4:120139/1‑139 (MQ=255)
tCCTGCTGTTTATTTAATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTcagcct                                                                                                                          >  7:8850/1‑139 (MQ=255)
tCCTGCTGTTTATTTAATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTcagcct                                                                                                                          >  1:412110/1‑139 (MQ=255)
tCCTGCTGTTTATTTAATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTcagcct                                                                                                                          >  1:8861/1‑139 (MQ=255)
  ctgctgTTTATTTAATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTcagcctg                                                                                                                         <  6:335035/138‑1 (MQ=255)
     ctgTTTATTTAATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGctc                                                                                                                      >  5:200510/1‑138 (MQ=255)
            tttaATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAAt                                                                                                              >  2:390918/1‑139 (MQ=255)
               aaTCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGaa                                                                                                           >  5:317910/1‑139 (MQ=255)
                 tttAATATCTTTAATAGTTTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCTGAACGGAACTTCTTCAACACAATGTGTTGATATTATAATGCCTCTCGGGAAATATTCAGGCTGCTCCACAAAATGAAcc                                                                                                         <  4:86926/137‑1 (MQ=255)
                   tAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCtt                                                                                                       <  4:182160/139‑1 (MQ=255)
                     atatCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAAcc                                                                                                         <  8:413564/135‑1 (MQ=255)
                          aTGAAAAGATTTTTCCGCGTCGGTAGTCATGCCATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  4:143914/1‑138 (MQ=255)
                          aTGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  8:419869/1‑138 (MQ=255)
                           tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  3:23043/1‑137 (MQ=255)
                           tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  3:134436/1‑137 (MQ=255)
                           tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  6:261061/1‑137 (MQ=255)
                           tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  3:267559/1‑137 (MQ=255)
                           tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  3:92891/1‑137 (MQ=255)
                           tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  7:48625/1‑137 (MQ=255)
                           tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  1:304178/1‑137 (MQ=255)
                           tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  1:122102/1‑137 (MQ=255)
                           tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                 >  1:108693/1‑137 (MQ=255)
                                      ttCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                     <  5:261061/138‑1 (MQ=255)
                                      ttCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                     <  6:399698/138‑1 (MQ=255)
                                      ttCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                     <  2:122102/138‑1 (MQ=255)
                                      ttCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                     <  3:179038/138‑1 (MQ=255)
                                      ttCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                     <  4:134436/138‑1 (MQ=255)
                                      ttCCGCGGCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                     <  4:268810/138‑1 (MQ=255)
                                       tCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGc                                                                                   >  7:337152/1‑139 (MQ=255)
                                               ggTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAag                                                                           <  5:166234/139‑1 (MQ=255)
                                               ggTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAag                                                                           <  1:417433/139‑1 (MQ=255)
                                                        gACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCat                                                                   >  8:438555/1‑137 (MQ=255)
                                                              ctctTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCa                                                             >  1:354375/1‑138 (MQ=255)
                                                              ctctTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGATCATTAAGTAGTTCAAGATCaaa                                                            >  4:317456/1‑139 (MQ=255)
                                                                ctTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCAAAAc                                                          >  6:257317/1‑139 (MQ=255)
                                                                  ttATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                >  3:302843/1‑115 (MQ=255)
                                                                  ttATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                <  4:302843/115‑1 (MQ=255)
                                                                    ataGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCa                                                       <  3:54471/138‑1 (MQ=255)
                                                                         aCCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCCCAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCg                                                 >  3:367343/1‑139 (MQ=255)
                                                                          ccGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCgg                                                <  1:13059/139‑1 (MQ=255)
                                                                           cggaacggaaCTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGgc                                               >  1:195745/1‑139 (MQ=255)
                                                                           cggaacggaaCTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTAAAGATCCAAACGCACTCTCGgc                                               >  7:140772/1‑139 (MQ=255)
                                                                           cggaacggaaCTTCTTCAACACAATGTGTTGAAATTATAATGCCTCTCGCGCAAAATTCAGCCTGCTCCACAAAATGAACCTACTCCATGAGAGAATCATTCCTCATTAAGTAGTTCAATATACAAACGCAATCTCGgc                                               >  6:299587/1‑139 (MQ=255)
                                                                             gaacggaacTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACTCACTCTCGgagc                                             >  2:178889/1‑139 (MQ=255)
                                                                             gaacgcaacTTCTACAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCACCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCACGgcgc                                             >  6:389611/1‑139 (MQ=255)
                                                                                  gaacTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTaa                                        <  2:354375/139‑1 (MQ=255)
                                                                                     cttcttCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACt                                      >  1:146015/1‑138 (MQ=255)
                                                                                             acacAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATgag                                                                                              >  6:268785/1‑74 (MQ=255)
                                                                                             acacAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATgag                                                                                              <  5:268785/74‑1 (MQ=255)
                                                                                                 aaTGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATTGTTTa                          >  4:198139/1‑138 (MQ=255)
                                                                                                 aaTGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTa                          >  2:319716/1‑138 (MQ=255)
                                                                                                   tgtgTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTaaa                        >  8:347938/1‑138 (MQ=255)
                                                                                                   tgtgTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTaaa                        >  6:397919/1‑138 (MQ=255)
                                                                                                        tGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCaa                  >  4:251881/1‑139 (MQ=255)
                                                                                                         gACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                     >  8:390952/1‑71 (MQ=255)
                                                                                                         gACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                     <  7:390952/71‑1 (MQ=255)
                                                                                                         gACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTTTCGGCGCTTTAACTGATAATGGTTTAAAAACCAAc                 >  7:159672/1‑139 (MQ=255)
                                                                                                         gACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCaa                  <  6:200510/138‑1 (MQ=255)
                                                                                                          aCATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACg                >  8:433753/1‑139 (MQ=255)
                                                                                                           cATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACg                >  2:141137/1‑138 (MQ=255)
                                                                                                             ttATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGa              >  8:154470/1‑138 (MQ=255)
                                                                                                             ttATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGa              >  6:204964/1‑138 (MQ=255)
                                                                                                             ttATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGa              >  3:166823/1‑138 (MQ=255)
                                                                                                               ataATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATa            >  1:345482/1‑138 (MQ=255)
                                                                                                               ataATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATa            >  3:233593/1‑138 (MQ=255)
                                                                                                                    gCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCt      >  8:196412/1‑139 (MQ=255)
                                                                                                                     ccTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCtt     >  4:227047/1‑139 (MQ=255)
                                                                                                                      ctctCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                >  8:65969/1‑63 (MQ=255)
                                                                                                                      ctctCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                <  7:65969/63‑1 (MQ=255)
                                                                                                                      ctctCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttt    >  6:263906/1‑139 (MQ=255)
                                                                                                                      ctctCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttt    >  2:162465/1‑139 (MQ=255)
                                                                                                                      ctctCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttt    >  5:108019/1‑139 (MQ=255)
                                                                                                                        ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                     <  3:196008/56‑1 (MQ=255)
                                                                                                                        ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGTCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATAttttt  >  7:440196/1‑139 (MQ=255)
                                                                                                                        ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCATGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttttt  >  1:155259/1‑139 (MQ=255)
                                                                                                                        ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTaa                                        >  2:104032/1‑101 (MQ=255)
                                                                                                                        ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTaa                                        <  1:104032/101‑1 (MQ=255)
                                                                                                                        ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttttt  >  2:145052/1‑139 (MQ=255)
                                                                                                                        ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttttt  >  4:270372/1‑139 (MQ=255)
                                                                                                                        ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttttt  >  4:40822/1‑139 (MQ=255)
                                                                                                                        ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTCATAATGGTTTAAAAACCAACGGATAAAATCttttt  >  6:192489/1‑139 (MQ=255)
                                                                                                                        ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGAAGTTCAAGAACCAACCGCACGCTCGGCGCTATAACAGATAAAGGTTTAAAAACCAACGCATAAAAtgaattt  >  6:317930/1‑133 (MQ=255)
                                                                                                                        ctcGCGCAAAATTCAGCCTGCACCACAAAATGAACCTTCTCCATCACAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACCCACTCTCGGCGCTTTAACTGATAATGGTTAAAAAACCAACCGAAAAAATCtatat  >  7:57834/1‑135 (MQ=255)
                                                                                                                         tcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCtttt   <  3:143914/137‑1 (MQ=255)
                                                                                                                         tcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCtttt   <  7:419869/137‑1 (MQ=255)
                                                                                                                          cGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTaa                                        <  5:72134/99‑1 (MQ=255)
                                                                                                                          cGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTaa                                        >  6:72134/1‑99 (MQ=255)
                                                                                                                             gCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                <  5:224896/56‑1 (MQ=255)
                                                                                                                             gCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                >  6:224896/1‑56 (MQ=255)
                                                                                                                                   |                                                                                                                               
TCCTGCTGTTTATTTAATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAACTCTGCCTGCTCTACAAAATGAACCTTTTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTT  >  CP006881/2183836‑2184094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A