Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,195,809 T→A T24T (ACA→ACT)  U712_11000 ← Chorismate mutase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,195,8090TA100.0% 224.2 / NA 71T24T (ACA→ACT) U712_11000Chorismate mutase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (34/37);  total (34/37)

TGCCATCCTGAAAGCTCACGGACAGCTTTTGCCGGGAAAACGGAGTGCAAATCAGGTGTCGCCGAAAGAAGCATTTGAACAACATCTTCCGGTTTTGTTTTGTTTTCTTCTATGATTTTCTCTAACAGCTGTTTTGTTTTTTGTAAAATTTCTTCTTCAGTATCTCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGCGT  >  CP006881/2195675‑2195941
                                                                                                                                      |                                                                                                                                    
tGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCtgtttagttt                                                                                                                                  >  6:174154/1‑139 (MQ=255)
tGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCtgtttagttt                                                                                                                                  >  4:218253/1‑139 (MQ=255)
tGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCtgtttagttt                                                                                                                                  >  2:258661/1‑139 (MQ=255)
  ccATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGttttt                                                                                                                                >  1:215938/1‑139 (MQ=255)
  ccATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGttttt                                                                                                                                >  4:218449/1‑139 (MQ=255)
  ccATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGttttt                                                                                                                                >  7:231128/1‑139 (MQ=255)
  ccATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGttttt                                                                                                                                >  7:252753/1‑139 (MQ=255)
   cATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGtttttt                                                                                                                               >  1:381114/1‑139 (MQ=255)
     tCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTg                                                                                                                              >  1:362586/1‑138 (MQ=255)
     tCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTg                                                                                                                              >  4:116937/1‑138 (MQ=255)
     tCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTg                                                                                                                              >  7:419433/1‑138 (MQ=255)
          aaaGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTaaa                                                                                                                          <  3:116937/137‑1 (MQ=255)
             gCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttc                                                                                                                     <  3:378098/139‑1 (MQ=255)
             gCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttc                                                                                                                     <  2:80970/139‑1 (MQ=255)
                 gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTATAATttcttct                                                                                                                 >  3:382138/5‑139 (MQ=255)
                 gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttcttct                                                                                                                 >  2:106717/5‑139 (MQ=255)
                 gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttcttct                                                                                                                 >  7:332636/5‑139 (MQ=255)
                 gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttctt                                                                                                                   <  4:362523/133‑1 (MQ=255)
                 gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttctt                                                                                                                   <  6:361422/133‑1 (MQ=255)
                 gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCAGACAGAAGCATTTGAACATCATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttctt                                                                                                                   <  1:136420/133‑1 (MQ=255)
                  cgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttcttct                                                                                                                 >  8:4786/4‑138 (MQ=255)
                         cTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTAtc                                                                                                         >  4:37295/1‑139 (MQ=255)
                         cTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTAtc                                                                                                         <  3:218449/139‑1 (MQ=255)
                          gtttGCCGGGAAACCAGCGTGCAATTCAGGGGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTGTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTAtcc                                                                                                        <  8:208839/138‑2 (MQ=255)
                             tGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCg                                                                                                      <  5:185776/138‑1 (MQ=255)
                               ccGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGtt                                                                                                    <  8:252753/138‑1 (MQ=255)
                               ccGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTc                                                                                                   <  2:390730/139‑1 (MQ=255)
                               ccGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTc                                                                                                   <  7:6153/139‑1 (MQ=255)
                               ccGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTc                                                                                                   <  8:332636/139‑1 (MQ=255)
                                  ggAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAAc                                                                                                <  2:381114/139‑1 (MQ=255)
                                   gAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACt                                                                                               >  6:164023/1‑139 (MQ=255)
                                   gAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACt                                                                                               >  7:23718/1‑139 (MQ=255)
                                       acagcgTGAAAATCAGGTTTAGCCGACAGAAGCATTTTAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACATCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAg                                                                                           <  4:382138/134‑1 (MQ=255)
                                           cgTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTg                                                                                        >  4:372963/2‑138 (MQ=255)
                                                       gtgtAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAg                                                                                           >  3:90606/1‑123 (MQ=255)
                                                       gtgtAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAg                                                                                           <  4:90606/123‑1 (MQ=255)
                                                       gtgtAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattcc                                                                           >  7:308017/1‑139 (MQ=255)
                                                         gtagCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAg                                                                                           >  3:298885/4‑121 (MQ=255)
                                                         gtagCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAg                                                                                           <  4:298885/118‑1 (MQ=255)
                                                          tagCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACATCTGTTTAGTTTTTTTTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgagaattcagc                                                                         >  7:415987/3‑138 (MQ=255)
                                                            gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      >  6:414423/1‑139 (MQ=255)
                                                            gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      >  7:223007/1‑139 (MQ=255)
                                                            gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      >  4:99286/1‑139 (MQ=255)
                                                            gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      <  5:364124/139‑1 (MQ=255)
                                                            gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      <  1:258661/139‑1 (MQ=255)
                                                            gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      <  5:164023/139‑1 (MQ=255)
                                                            gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      <  5:134021/139‑1 (MQ=255)
                                                            gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      >  2:235658/1‑139 (MQ=255)
                                                            gCCGACAGAAGCATGTGAACAACATCTTCCGGTTTTGTATGATTTGCTTCTCTGATCTGCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccccgaaatccgcgaa                                                                      <  8:103475/139‑1 (MQ=255)
                                                            gCCGAAAGAAGCATATGAACAACATCATCCGGGTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGATGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      <  8:193071/139‑1 (MQ=255)
                                                             ccGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTTAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      <  3:372963/138‑1 (MQ=255)
                                                               gacagaagCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAatca                                                                   <  3:218253/136‑1 (MQ=255)
                                                                 cagaagCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAatcat                                                                  >  2:87874/2‑138 (MQ=255)
                                                                  agaagCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTAtc                                                                                                         <  7:15629/98‑1 (MQ=255)
                                                                  agaagCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTAtc                                                                                                         >  8:15629/1‑98 (MQ=255)
                                                                       cATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCATCTTCAGTATCCCGTTCAACTGTAGTTGCTCAGCGAATACAGCGAATCATCaagatc                                                           >  6:431359/1‑138 (MQ=255)
                                                                                  caTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTc                                                                                                   <  7:79379/88‑1 (MQ=255)
                                                                                  caTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTc                                                                                                   >  8:79379/1‑88 (MQ=255)
                                                                                  caTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      <  7:289123/117‑1 (MQ=255)
                                                                                  caTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                                                      >  8:289123/1‑117 (MQ=255)
                                                                                  caTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAAt                                                >  4:366308/1‑139 (MQ=255)
                                                                                   aTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATc                                               <  3:37295/139‑1 (MQ=255)
                                                                                       tCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCa                                           >  7:29015/1‑139 (MQ=255)
                                                                                         cGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCAt                                          <  2:362586/138‑1 (MQ=255)
                                                                                         cGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCAt                                          <  6:390229/138‑1 (MQ=255)
                                                                                            ttttgtatgattttCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGt                                      >  1:302167/1‑139 (MQ=255)
                                                                                                     attttCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTcagccag                              <  7:4786/137‑1 (MQ=255)
                                                                                                         tcttctATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGctct                          >  5:35343/1‑138 (MQ=255)
                                                                                                                tGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGtt                    <  3:99286/137‑1 (MQ=255)
                                                                                                                tGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGtt                    <  5:414423/137‑1 (MQ=255)
                                                                                                                tGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGtg                    <  8:54440/137‑2 (MQ=255)
                                                                                                                            aCAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGaa         <  3:59128/136‑1 (MQ=255)
                                                                                                                               gCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATgta   <  8:308017/139‑3 (MQ=255)
                                                                                                                                cTGTTTAGTTTTTTGTAAAATTTCTTCTTCATTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTGCAGCCAGCTCTCAAGTTCATATCTGCAAAAttaat  >  4:19893/1‑135 (MQ=255)
                                                                                                                                  gtttagttttTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGctc                           <  3:2326/112‑1 (MQ=255)
                                                                                                                                  gtttagttttTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGctc                           >  4:2326/1‑112 (MQ=255)
                                                                                                                                      |                                                                                                                                    
TGCCATCCTGAAAGCTCACGGACAGCTTTTGCCGGGAAAACGGAGTGCAAATCAGGTGTCGCCGAAAGAAGCATTTGAACAACATCTTCCGGTTTTGTTTTGTTTTCTTCTATGATTTTCTCTAACAGCTGTTTTGTTTTTTGTAAAATTTCTTCTTCAGTATCTCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGCGT  >  CP006881/2195675‑2195941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A