Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F56 I20 R2
|
1958 |
92.1 |
3575798 |
91.1% |
3257551 |
126.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
2,195,973 |
G→A |
I331I (ATC→ATT) |
U712_11005 ← |
3‑dehydroquinate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 2,195,973 | 0 | G | A | 100.0%
| 201.5
/ NA
| 65 | I331I (ATC→ATT) | U712_11005 | 3‑dehydroquinate synthase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (32/33); total (32/33) |
CGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGCGTGATCAGCAACTTTTCCTAATTCGTTGAGCACGATAAACTGAATCTTCCCGCCGCGGGTTTTCTTATCATTCATCATACGGTCCAATAGAACCGAAGTTTCCGTCTCATTTTTAATTTGACTTGGATAGCCCAGGCTTATTAGCCAACTGACCAAACGTTTCCTGTC > CP006881/2195840‑2196107
|
cGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATaaa > 1:94298/1‑139 (MQ=255)
ttCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACt > 6:161747/1‑139 (MQ=255)
tAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTc > 3:28854/1‑139 (MQ=255)
tAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTc > 5:84581/1‑139 (MQ=255)
gCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCccgcc > 7:37723/1‑139 (MQ=255)
tccgcgaattccgcgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCccgccac > 5:410882/1‑137 (MQ=255)
tccgcgaattccgcgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCccgccac > 3:189464/1‑137 (MQ=255)
gcgaattccgcgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACggg > 5:343478/1‑139 (MQ=255)
gcgaattccgcgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACggg > 6:324484/1‑139 (MQ=255)
cgcgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTa < 8:29015/139‑1 (MQ=255)
cgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTAtc < 8:223007/139‑1 (MQ=255)
aatCATCATGATGTCTCCTCCAATCTCCATTTGTTCAGCCAGCTCTCAAGTTAATTTCTTGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAATCTGAATCTTCCCGCCACGGGTTTTCTTAtcat < 8:415987/139‑1 (MQ=255)
aatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCCTTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTAtcat < 3:340457/139‑1 (MQ=255)
atcatGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTAtcattcat > 8:34876/1‑139 (MQ=255)
tgatgTCTCCTCCAATCGCCATTTGTTCAGCCATCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGCATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 6:412547/139‑1 (MQ=255)
tgatgTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 4:189464/139‑1 (MQ=255)
tgatgTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 5:324484/139‑1 (MQ=255)
tgatgTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 4:68638/139‑1 (MQ=255)
gatgTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 2:94298/138‑1 (MQ=255)
atgGCTCCTCCAATCGCCATTTGTTCAGCCACCTCTCAAGTTCAGTTCTGGAAAATGTATGAGCAGGAACTTTGCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 8:231128/137‑1 (MQ=255)
tgTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACgg < 5:161747/139‑1 (MQ=255)
gTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGt > 4:60894/1‑139 (MQ=255)
ctcctcCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGtt > 5:252034/1‑137 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 7:149433/132‑1 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa > 8:149433/1‑132 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 1:224684/132‑1 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa > 2:224684/1‑132 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGttc > 3:153830/1‑136 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGttc > 3:395418/1‑136 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTAGCATTCATCATACGGttc > 2:89711/1‑136 (MQ=255)
ctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCaa < 2:302167/138‑1 (MQ=255)
aTCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCACGAAAAAGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAAACAACACGCCACCGGAGTTCTAATCATTAATCATACGGTTCAAGAGAAc > 2:135035/1‑139 (MQ=255)
tCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAAcc > 3:360337/1‑139 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAACCTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAg > 7:2848/1‑139 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca > 2:113325/1‑118 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca < 1:113325/118‑1 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca < 5:79410/118‑1 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca > 4:72663/1‑118 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca < 3:72663/118‑1 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca > 6:79410/1‑118 (MQ=255)
gTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTc < 4:103969/138‑1 (MQ=255)
ttCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCg < 6:38809/139‑1 (MQ=255)
cagccagcTATCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCAGAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGt < 8:23718/138‑1 (MQ=255)
cAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCttttctgat < 4:28854/139‑6 (MQ=255)
cATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGAc < 8:37723/138‑1 (MQ=255)
ttCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTgg > 7:239548/1‑139 (MQ=255)
ttCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTg > 7:176453/1‑138 (MQ=255)
cTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGTGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGa < 6:410145/138‑1 (MQ=255)
cTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGa < 4:360337/138‑1 (MQ=255)
cTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGa < 6:84581/138‑1 (MQ=255)
atgtatgatgaGCAACTTTCGCTAATTCTGTGAGCACATTAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCAGCATACGGTTCAAGAGAAGCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATATCCCAg < 2:313797/134‑1 (MQ=255)
atgtatGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCCTCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAg < 3:19893/134‑1 (MQ=255)
atgtatGATAAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGATCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAg < 5:431359/134‑1 (MQ=255)
tgtatGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAgg > 8:28423/5‑139 (MQ=255)
tCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCttttta < 8:2848/139‑1 (MQ=255)
gCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 2:354822/72‑1 (MQ=255)
gCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa > 1:354822/1‑72 (MQ=255)
cAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCGTTTTAGCCa > 3:53272/1‑139 (MQ=255)
ccTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca < 1:342859/61‑1 (MQ=255)
ccTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca > 2:342859/1‑61 (MQ=255)
aTTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAAc < 7:34876/138‑1 (MQ=255)
ttCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGt > 7:375647/1‑139 (MQ=255)
ttCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCGTTTCTGATTTGACGTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGt > 6:900/1‑139 (MQ=255)
tGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCt > 8:429580/1‑139 (MQ=255)
gAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCt < 3:60894/138‑1 (MQ=255)
cacaATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGAATTGGATAACACAGGCGTTTTAGCCAGCTGACCAAACGTTTTCTGTc > 4:89703/1‑138 (MQ=255)
cacaATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCCGGTTTCGGATTTGACATGGATAACCCCGGCGTTTTAGGCAGCTGACCAAACGTTTTATGTc > 6:66415/1‑138 (MQ=255)
|
CGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGCGTGATCAGCAACTTTTCCTAATTCGTTGAGCACGATAAACTGAATCTTCCCGCCGCGGGTTTTCTTATCATTCATCATACGGTCCAATAGAACCGAAGTTTCCGTCTCATTTTTAATTTGACTTGGATAGCCCAGGCTTATTAGCCAACTGACCAAACGTTTCCTGTC > CP006881/2195840‑2196107
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
