Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,196,189 T→C G259G (GGA→GGG)  U712_11005 ← 3‑dehydroquinate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,196,1890TC100.0% 248.9 / NA 76G259G (GGA→GGG) U712_110053‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (41/35);  total (41/35)

ATTTGACTTGGATAGCCCAGGCTTATTAGCCAACTGACCAAACGTTTCCTGTCCATTTCACAGCCCGCTGTCTTTTCGCTTATATATAAAGCAAACTGCATCCCGAGGGCTACGGCATCACCGTGAGTGATCTGTCCGTATCCATATTCAGCCTCAACGGCATGGCCGAGCGTATGTCCGAAGTTTAAGTAAGCTCTGATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGATGCTTTTATTGAAATCCCTTTAAAAATCATGTCAT  >  CP006881/2196055‑2196322
                                                                                                                                      |                                                                                                                                     
aTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGccca                                                                                                                                    <  3:2036/138‑2 (MQ=255)
aTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGccca                                                                                                                                    <  2:270812/138‑2 (MQ=255)
          gATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTc                                                                                                                         >  3:228328/1‑139 (MQ=255)
               cccAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGCCTACGGCATCACCTTGAGTGATCTGCCCATATCCATATTCCGCCt                                                                                                                    >  1:184168/1‑139 (MQ=255)
                ccAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTc                                                                                                                   <  3:93545/139‑1 (MQ=255)
                    gCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATGTCCATATTCCGCCTCAACg                                                                                                               >  5:150431/1‑139 (MQ=255)
                    gCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACg                                                                                                               >  2:252878/1‑139 (MQ=255)
                    gCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCACATATCCATATTCCGCCTCAACg                                                                                                               >  8:250403/1‑139 (MQ=255)
                        tttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGc                                                                                                             <  1:195551/136‑1 (MQ=255)
                        tttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGc                                                                                                             <  3:89703/136‑1 (MQ=255)
                        tttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCa                                                                                                            <  5:66415/137‑1 (MQ=255)
                        tttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCa                                                                                                            <  1:304196/137‑1 (MQ=255)
                         ttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATg                                                                                                          >  4:110314/1‑139 (MQ=255)
                            gCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGcc                                                                                                       <  2:43975/139‑1 (MQ=255)
                            gCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGcc                                                                                                       <  8:219476/139‑1 (MQ=255)
                            gCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGcc                                                                                                       <  6:35343/139‑1 (MQ=255)
                                    aCCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGt                                                                                                 <  5:900/137‑1 (MQ=255)
                                       aaaCGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATgcc                                                                                            <  7:26394/139‑3 (MQ=255)
                                         aCGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGccca                                                                                          <  8:375647/139‑2 (MQ=255)
                                         aCGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGccca                                                                                          <  8:375832/139‑2 (MQ=255)
                                         aCGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGccca                                                                                          <  1:252878/139‑2 (MQ=255)
                                         aCGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGccca                                                                                          <  3:261995/139‑2 (MQ=255)
                                              ttcTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGccca                                                                                                                                    >  7:408572/3‑91 (MQ=255)
                                              ttcTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGccca                                                                                                                                    <  8:408572/90‑2 (MQ=255)
                                              ttcTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGCCATGGCCGAGCGTATGCCCAAAGtt                                                                                     >  6:113433/3‑139 (MQ=255)
                                                   tCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaag                                                                                 >  3:413560/1‑138 (MQ=255)
                                                     cATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATTGCCGAGCGTATGCCCAAAGTTtaagta                                                                               <  7:250403/138‑1 (MQ=255)
                                                     cATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaagtaa                                                                              <  7:28423/139‑1 (MQ=255)
                                                      aTTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaagtaag                                                                             <  5:258970/139‑1 (MQ=255)
                                                        ttCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATAT‑CATATTCCGCCTCAACGGCATGGcc                                                                                                       >  6:197462/1‑110 (MQ=255)
                                                        ttCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATAT‑CATATTCCGCCTCAACGGCATGGcc                                                                                                       <  5:197462/110‑1 (MQ=255)
                                                               cctacagTCTTTTCGCTTATATATAAAGCAAACTGCATTACGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATcc                                                                    >  7:373918/7‑139 (MQ=255)
                                                                ctacagTCTTTTCGCTTATATATAAAGCTATCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCAAATTCCGCATCAACGGCATGGCCGAGCGTATGCCCAAATTTTAAGTAAGCTCTTATccc                                                                   <  5:412346/134‑1 (MQ=255)
                                                                  acagTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCct                                                                 >  3:8185/4‑139 (MQ=255)
                                                                    agTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGt                                                                                                 <  3:205613/104‑1 (MQ=255)
                                                                    agTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGt                                                                                                 >  4:205613/2‑105 (MQ=255)
                                                                    agTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCctct                                                               >  4:85729/2‑139 (MQ=255)
                                                                    agTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCctct                                                               >  6:165591/2‑139 (MQ=255)
                                                                     gTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCtctt                                                              <  3:162666/139‑1 (MQ=255)
                                                                        ttttCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTcttctt                                                           >  4:93122/1‑139 (MQ=255)
                                                                         tttCGCTTATATATAAAGCATACTGCATTCCGCGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCttt                                                          >  4:226689/1‑139 (MQ=255)
                                                                         tttCGCTTATATATAAAGCAACCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCCTATTCCGCCTCACCGGCATGGCCGCGCGTATGCCCACAGGTTACGTACGCTCTTAGCCCCTCGTCttt                                                          >  4:324714/1‑139 (MQ=255)
                                                                         tttCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGTGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCttt                                                          >  5:93915/1‑139 (MQ=255)
                                                                         tttCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGATTAAGTAAGATCTTATACCCTCTTAttt                                                          >  5:317546/1‑139 (MQ=255)
                                                                           tCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCttttt                                                        >  5:364601/1‑139 (MQ=255)
                                                                           tCGCTTATATATAAAGCAAACTGAATTCCGAGGGCTACGGCATCACAGTGAGAGATCTGCACATATCCACATTACGCCACAACGGCATGGCCGAGCGTATGCGCAAAGTGTAAGAAAGCTCTTAACCCCTCTTCtgttt                                                        >  6:412346/1‑139 (MQ=255)
                                                                             gCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCa                                                      <  4:129595/139‑1 (MQ=255)
                                                                                tatatataAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGc                                                                                                                      >  1:53109/1‑72 (MQ=255)
                                                                                tatatataAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGc                                                                                                                      <  2:53109/72‑1 (MQ=255)
                                                                                  tatataAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGTCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCctg                                                 <  8:417312/139‑1 (MQ=255)
                                                                                  tatataAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCctg                                                 >  7:184616/1‑139 (MQ=255)
                                                                                        aaGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAAc                                           <  3:390644/139‑1 (MQ=255)
                                                                                        aaGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAAc                                           <  7:250270/139‑1 (MQ=255)
                                                                                         aGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGCTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAAc                                           >  2:147245/1‑138 (MQ=255)
                                                                                         aGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCa                                                                                                            <  8:50456/73‑1 (MQ=255)
                                                                                         aGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCa                                                                                                            >  7:50456/1‑73 (MQ=255)
                                                                                         aGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTAATCCTGCTGAACg                                          >  7:420745/1‑139 (MQ=255)
                                                                                              aCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGa                                     <  1:231931/139‑1 (MQ=255)
                                                                                              aCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGa                                     <  3:198445/139‑1 (MQ=255)
                                                                                              aCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGa                                     <  3:110314/139‑1 (MQ=255)
                                                                                              aCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGa                                     >  4:170242/1‑139 (MQ=255)
                                                                                              aCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCACTTAACCCCTCTTCTTTTTCAACCTGCTGAACGACAGa                                     >  6:173907/1‑139 (MQ=255)
                                                                                                    ttccGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCtt                                >  3:71540/3‑138 (MQ=255)
                                                                                                     tccGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATACCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCttt                               >  6:255989/2‑138 (MQ=255)
                                                                                                       ctaGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCa                                                                                                            <  5:359943/57‑1 (MQ=255)
                                                                                                       cGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCa                                                                                                            >  6:359943/1‑59 (MQ=255)
                                                                                                            gCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaagt                                                                                >  3:51928/1‑82 (MQ=255)
                                                                                                            gCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaagt                                                                                <  4:51928/82‑1 (MQ=255)
                                                                                                            gCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGaaa                       >  2:63634/1‑139 (MQ=255)
                                                                                                            gCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGaaa                       >  7:228746/1‑139 (MQ=255)
                                                                                                                 ggCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCt                  >  7:376562/1‑139 (MQ=255)
                                                                                                                      cACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaagta                                                                               >  2:88422/1‑73 (MQ=255)
                                                                                                                      cACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaagta                                                                               <  1:88422/73‑1 (MQ=255)
                                                                                                                      cACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGCACGACAGCCGCTTTAATTTATATGCCTTTaa              >  8:143734/1‑138 (MQ=255)
                                                                                                                           tgagtgaTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAAtaa        >  5:365551/1‑137 (MQ=255)
                                                                                                                             agtgaTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACAACAGACGCTTTAATTGAAATGCCTTTAAAAATCATg      >  5:34387/1‑139 (MQ=255)
                                                                                                                                 aTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaagta                                                                               >  8:230762/1‑62 (MQ=255)
                                                                                                                                 aTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaagta                                                                               <  7:230762/62‑1 (MQ=255)
                                                                                                                                 aTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCa   <  8:413273/138‑1 (MQ=255)
                                                                                                                                 aTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCAt  >  7:78506/1‑139 (MQ=255)
                                                                                                                                      |                                                                                                                                     
ATTTGACTTGGATAGCCCAGGCTTATTAGCCAACTGACCAAACGTTTCCTGTCCATTTCACAGCCCGCTGTCTTTTCGCTTATATATAAAGCAAACTGCATCCCGAGGGCTACGGCATCACCGTGAGTGATCTGTCCGTATCCATATTCAGCCTCAACGGCATGGCCGAGCGTATGTCCGAAGTTTAAGTAAGCTCTGATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGATGCTTTTATTGAAATCCCTTTAAAAATCATGTCAT  >  CP006881/2196055‑2196322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A