Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,196,288 T→C A226A (GCA→GCG)  U712_11005 ← 3‑dehydroquinate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,196,2880TC99.2% 381.7 / NA 118A226A (GCA→GCG) U712_110053‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (60/57);  minor base A (1/0);  total (61/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 118 total aligned reads displayed.

TCCCGAGGGCTACGGCATCACCGTGAGTGATCTGTCCGTATCCATATTCAGCCTCAACGGCATGGCCGAGCGTATGTCCGAAGTTTAAGTAAGCTCTGATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGATGCTTTTATTGAAATCCCTTTAAAAATCATGTCATTCAGCTGATCACTGGTGATATCACGCAGTGAGCGGATATTCAGCAGCTCTTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCAT  >  CP006881/2196155‑2196422
                                                                                                                                     |                                                                                                                                      
ttccGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCtt                                                                                                                                    >  3:71540/3‑138 (MQ=255)
             ggCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCt                                                                                                                      >  7:376562/1‑139 (MQ=255)
                  cACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGCACGACAGCCGCTTTAATTTATATGCCTTTaa                                                                                                                  >  8:143734/1‑138 (MQ=255)
                       tgagtgaTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAAtaa                                                                                                            >  5:365551/1‑137 (MQ=255)
                         agtgaTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACAACAGACGCTTTAATTGAAATGCCTTTAAAAATCATg                                                                                                          >  5:34387/1‑139 (MQ=255)
                             aTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCa                                                                                                       <  8:413273/138‑1 (MQ=255)
                             aTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCAt                                                                                                      >  7:78506/1‑139 (MQ=255)
                                  cccatATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAg                                                                                                  <  3:93122/134‑1 (MQ=255)
                                  cccatATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGc                                                                                                 >  2:418706/5‑139 (MQ=255)
                                  cccatATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGc                                                                                                 >  1:282568/5‑139 (MQ=255)
                                   ccatATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACAACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCt                                                                                                <  6:34387/136‑1 (MQ=255)
                                       aTCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCGCCTCTTCTTTTTCATCCTGCTGAACGACAGCCGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGAt                                                                                             >  2:155432/1‑138 (MQ=255)
                                       aTCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGAt                                                                                             >  6:398947/1‑138 (MQ=255)
                                          cATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCat                                                                                          <  4:413560/138‑2 (MQ=255)
                                            tatTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCattag                                                                                       <  1:147245/139‑5 (MQ=255)
                                            tatTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCattag                                                                                       >  3:238662/1‑135 (MQ=255)
                                            tatTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCATTTAAAAATCATGTCATTCAGCTGATCattag                                                                                       >  2:136297/1‑135 (MQ=255)
                                            tatTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCAACTCTTCTTTTTCATCCTGCTGAACGACAGACGATTTAATTGAAATGCATTTAAAAATCATTTCATTCAGCTGATCattag                                                                                       >  6:30939/1‑135 (MQ=255)
                                              ttCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTg                                                                                     <  5:173907/139‑1 (MQ=255)
                                                 cgCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGata                                                                                  >  3:107397/2‑139 (MQ=255)
                                                 cgCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGata                                                                                  >  5:167524/2‑139 (MQ=255)
                                                  gCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGata                                                                                  >  7:398478/1‑138 (MQ=255)
                                                   ccTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCttt                                                                                                                                   <  8:190802/88‑1 (MQ=255)
                                                   ccTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCttt                                                                                                                                   >  7:190802/1‑88 (MQ=255)
                                                   ccTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGatat                                                                                 >  7:280091/1‑138 (MQ=255)
                                                   ccTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGatat                                                                                 >  1:342056/1‑138 (MQ=255)
                                                   ccTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGatat                                                                                 >  2:265732/1‑138 (MQ=255)
                                                   ccTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGatat                                                                                 >  7:169803/1‑138 (MQ=255)
                                                    cTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCa                                                                               <  8:56049/139‑1 (MQ=255)
                                                       aaCGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACg                                                                             >  4:277398/1‑138 (MQ=255)
                                                       aaCGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAAAGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATTTCATTAAGCTGATCATTAGTGATATCACg                                                                             <  7:160367/138‑1 (MQ=255)
                                                        aCGGGATGGCCGAGCGTATGCCCAAAGTTTTACTAAGCTCTTATCCCCTGTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCa                                                                           <  5:113433/139‑1 (MQ=255)
                                                        aCGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCa                                                                           <  4:238662/139‑1 (MQ=255)
                                                        aCGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCa                                                                           <  2:143465/139‑1 (MQ=255)
                                                           gCATGGCCGAGCGTATGCCCTAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTg                                                                        <  6:317546/139‑1 (MQ=255)
                                                           gCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGatat                                                                                 <  6:422708/130‑1 (MQ=255)
                                                           gCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGatat                                                                                 >  5:422708/1‑130 (MQ=255)
                                                           gCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTg                                                                        <  4:228328/139‑1 (MQ=255)
                                                              tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                     <  5:398947/139‑2 (MQ=255)
                                                              tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                     <  2:342056/139‑2 (MQ=255)
                                                              tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                     <  1:265732/139‑2 (MQ=255)
                                                              tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                     <  2:301485/139‑2 (MQ=255)
                                                              tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                     >  3:222563/1‑138 (MQ=255)
                                                              tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCATTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                     >  8:159267/1‑138 (MQ=255)
                                                                    aGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACCGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCCGCTGATCATTAGTGATATCACGCAGTGAGTGGatat                                                               >  8:260560/1‑139 (MQ=255)
                                                                    aGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCa                                                                                                       >  4:314682/1‑99 (MQ=255)
                                                                    aGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCa                                                                                                       <  3:314682/99‑1 (MQ=255)
                                                                    aGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGatat                                                               >  1:359369/1‑139 (MQ=255)
                                                                    aGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTGTAAAAATCATGTCATTCAGCTGATCATTAGTGATATAACGCAGTGAGTGGatat                                                               >  6:161377/1‑139 (MQ=255)
                                                                          tgcccaaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGATATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCCCGCAGTGAGTGGATATTcag                                                           >  7:8561/7‑137 (MQ=255)
                                                                          tgcccaaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTcag                                                           >  6:43134/7‑137 (MQ=255)
                                                                            cccaaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTcagcag                                                        <  4:8185/134‑1 (MQ=255)
                                                                               aaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGctcc                                                    >  2:403960/2‑138 (MQ=255)
                                                                               aaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGctcc                                                    <  4:222563/138‑2 (MQ=255)
                                                                               aaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGctcc                                                    <  4:71540/138‑2 (MQ=255)
                                                                               aaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGctcc                                                    >  3:45036/2‑138 (MQ=255)
                                                                                aaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGctcct                                                   >  6:381863/1‑137 (MQ=255)
                                                                                     taagtaagCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGaa                                                                                                                            <  8:416781/61‑1 (MQ=255)
                                                                                      aagtaagCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAg                                                                                                  <  8:192450/86‑1 (MQ=255)
                                                                                      aagtaagCTCTTATCCCCTCTTCTTTTTCATCATGCTGAACGACAGACGCTTTAATTGAAATTCCTTTAAAAATCATGTCATTCAg                                                                                                  >  7:192450/1‑86 (MQ=255)
                                                                                       agtaagCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGaaa                                            <  6:167524/139‑1 (MQ=255)
                                                                                       agtaagCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGaa                                             <  1:63634/138‑1 (MQ=255)
                                                                                           atctctTATTCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                        <  5:255989/137‑1 (MQ=255)
                                                                                           agatctTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGATTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                        <  8:373918/136‑1 (MQ=255)
                                                                                           agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAAtg                                                                                                                         <  3:193949/58‑2 (MQ=255)
                                                                                           agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAAtg                                                                                                                         >  4:193949/1‑57 (MQ=255)
                                                                                           agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                        <  1:418706/139‑1 (MQ=255)
                                                                                           agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                        <  8:398478/139‑1 (MQ=255)
                                                                                           agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                        <  8:376562/139‑1 (MQ=255)
                                                                                           agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                        <  1:314302/139‑1 (MQ=255)
                                                                                           agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGATCCTCCAGAAACGct                                        <  8:7070/139‑1 (MQ=255)
                                                                                             ctctTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATTTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGctct                                      >  5:534/1‑139 (MQ=255)
                                                                                             ctctTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                     >  6:40807/1‑107 (MQ=255)
                                                                                                  aTCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCt                                                                                                <  3:146396/76‑1 (MQ=255)
                                                                                                  aTCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCt                                                                                                >  4:146396/1‑76 (MQ=255)
                                                                                                  aTCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTc                                   <  8:169803/137‑1 (MQ=255)
                                                                                                       ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACg                                                                             <  1:131044/90‑1 (MQ=255)
                                                                                                       ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                        <  1:252197/127‑1 (MQ=255)
                                                                                                       ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                        >  2:252197/1‑127 (MQ=255)
                                                                                                       ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGAt                             >  6:342059/1‑138 (MQ=255)
                                                                                                       ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGAt                             >  1:288696/1‑138 (MQ=255)
                                                                                                       ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGAt                             >  3:393557/1‑138 (MQ=255)
                                                                                                        tcttctTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCagcagc                                                       <  1:88574/111‑1 (MQ=255)
                                                                                                        tcttctTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCagcagc                                                       >  2:88574/1‑111 (MQ=255)
                                                                                                        tcttctTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATa                            >  2:336023/1‑138 (MQ=255)
                                                                                                          ttcttTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCCGCTCCTCCAGAATCGCTCTGTCATatagaa                           >  4:240224/1‑132 (MQ=255)
                                                                                                          ttcttTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATaa                           >  3:415324/1‑137 (MQ=255)
                                                                                                          tgcttTTTCATCCTGCTGAACGACAGCAGCATTAAAGGAAATGCCTTTAAAAATCATGTAATTCATATGATCATTAGTGATATCACGCAGTTAGTGGAGATTACGCAGCTCCTCCAGAAACACACTGTCATAGATaaat                         >  6:341583/3‑138 (MQ=255)
                                                                                                            cttTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAg                        <  2:288696/138‑1 (MQ=255)
                                                                                                            cttTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAg                        <  8:280091/138‑1 (MQ=255)
                                                                                                            cttTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAg                        <  8:420745/138‑1 (MQ=255)
                                                                                                                      ctgctgAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAAt              <  6:150431/138‑1 (MQ=255)
                                                                                                                      ctgctgAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAAt              <  6:93915/138‑1 (MQ=255)
                                                                                                                       tgctgAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACg                                                                             >  8:290247/1‑74 (MQ=255)
                                                                                                                       tgctgAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACg                                                                             <  7:290247/74‑1 (MQ=255)
                                                                                                                            aaCGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCt       >  6:224052/1‑139 (MQ=255)
                                                                                                                              cGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTg                                                                                     >  4:88259/1‑59 (MQ=255)
                                                                                                                              cGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTg                                                                                     <  3:88259/59‑1 (MQ=255)
                                                                                                                                 cAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGccct  >  7:113747/1‑137 (MQ=255)
                                                                                                                                 cAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCAt  >  4:19987/1‑139 (MQ=255)
                                                                                                                                     |                                                                                                                                      
TCCCGAGGGCTACGGCATCACCGTGAGTGATCTGTCCGTATCCATATTCAGCCTCAACGGCATGGCCGAGCGTATGTCCGAAGTTTAAGTAAGCTCTGATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGATGCTTTTATTGAAATCCCTTTAAAAATCATGTCATTCAGCTGATCACTGGTGATATCACGCAGTGAGCGGATATTCAGCAGCTCTTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCAT  >  CP006881/2196155‑2196422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A