Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,196,483 C→T K161K (AAG→AAA)  U712_11005 ← 3‑dehydroquinate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,196,4830CT100.0% 276.6 / NA 91K161K (AAG→AAA) U712_110053‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (53/38);  total (53/38)

GTGAGCGGATATTCAGCAGCTCTTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGATCGAAGCTCTTTTTCAGGCAAAGAACGCAGGAAGTCTGTATCGTAGAGCACGGCCTTCGGCTGATAAAATGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCAATGCCGCGCATAAAAGTGGCAG  >  CP006881/2196350‑2196619
                                                                                                                                     |                                                                                                                                        
gTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCgg                                                                                                                                     <  7:443131/139‑1 (MQ=255)
 tGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGc                                                                                                                                    >  1:342685/1‑139 (MQ=255)
 tGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGc                                                                                                                                    <  4:417972/139‑1 (MQ=255)
   agtggATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTg                                                                                                                                  >  8:21880/4‑139 (MQ=255)
           ttCAGCAGCTCCTCCAGAAACGCTCTGTCTTAGATAAAGGCGTGTTGAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                                                          >  1:134123/1‑137 (MQ=255)
           ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                                                          >  3:1627/1‑137 (MQ=255)
           ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                                                          >  6:154597/1‑137 (MQ=255)
           ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                                                          >  2:424008/1‑137 (MQ=255)
           ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                                                          <  5:161377/139‑3 (MQ=255)
              agcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCa                                                                                                                        <  3:214255/138‑1 (MQ=255)
              agcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCa                                                                                                                        <  1:403960/138‑1 (MQ=255)
               gcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCAcc                                                                                                                      >  7:408987/1‑139 (MQ=255)
               gcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGAACGGCTTTCGGCTGATAAAACGCAcc                                                                                                                      >  8:408753/1‑139 (MQ=255)
                   ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGAt                                                                                                                   >  8:127623/1‑138 (MQ=255)
                   ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTACGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGAt                                                                                                                   >  7:432426/1‑138 (MQ=255)
                                 ctctGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAg                                                                                                    >  6:353560/1‑139 (MQ=255)
                                 ctctGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGCAAATCTGTATCATAGAGCACGGCTTTCTGCTGATAAAACGCACCGATTAGATATTTTCCAAg                                                                                                    >  2:407719/1‑139 (MQ=255)
                                      tCATAGCTAAAAGCGTGTATAATCACTTCAGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                                                                <  8:184616/138‑1 (MQ=255)
                                      tCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                                                                <  1:42930/138‑1 (MQ=255)
                                      tCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                                                                <  4:107397/138‑1 (MQ=255)
                                           gATAAAAGCGTCTTTAATCACTTCTGCCATTCCGGAACTAAGCTCTTTTTCAGGCAGAGAACCCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAATACGCACCGATTAGATTTTTTCCAAGCGGATGGtt                                                                                           >  5:422185/1‑138 (MQ=255)
                                                aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                                                     >  2:368039/1‑139 (MQ=255)
                                                aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                                                     >  8:354896/1‑139 (MQ=255)
                                                aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                                                     >  8:29133/1‑139 (MQ=255)
                                                aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                                                     >  5:219837/1‑139 (MQ=255)
                                                aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                                                     >  7:167644/1‑139 (MQ=255)
                                                aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                                                     >  7:342898/1‑139 (MQ=255)
                                                aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                                                     >  2:162746/1‑139 (MQ=255)
                                                aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACAGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                                                     >  3:184973/1‑139 (MQ=255)
                                                    gtgtTTAATCACTTCTGCCATTCGGGACCTAAGCGCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTAct                                                                                 <  8:113747/139‑2 (MQ=255)
                                                    gtgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTAct                                                                                 <  1:424008/139‑2 (MQ=255)
                                                    gtgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTAct                                                                                 <  1:336023/139‑2 (MQ=255)
                                                     tgtTTAATCACTTCTGCCATTCCGGTCCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                                                                <  3:289256/123‑1 (MQ=255)
                                                     tgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                                                                >  4:289256/1‑123 (MQ=255)
                                                     tgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTActt                                                                                >  2:380891/1‑137 (MQ=255)
                                                     tgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGAACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTActt                                                                                >  6:385921/1‑137 (MQ=255)
                                                      gtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACttt                                                                               >  3:448777/1‑139 (MQ=255)
                                                       tttAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACttt                                                                               >  7:121296/1‑138 (MQ=255)
                                                                   tGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                                                  >  5:370104/1‑138 (MQ=255)
                                                                   tGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                                                  <  4:448777/139‑2 (MQ=255)
                                                                     ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACTCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                                                  <  5:306433/137‑2 (MQ=255)
                                                                     ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                                                  <  1:155432/137‑2 (MQ=255)
                                                                     ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                                                  <  1:162746/137‑2 (MQ=255)
                                                                          ccGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAAACTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGAGTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCAt                                                           >  8:190281/1‑139 (MQ=255)
                                                                          ccGGACCTAAGCTC‑TTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATg                                                          >  1:252287/1‑139 (MQ=255)
                                                                             gacctaaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATgcg                                                        >  7:379374/6‑139 (MQ=255)
                                                                                  aaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGcc                                                      >  6:399022/1‑136 (MQ=255)
                                                                                   aGCTCTTTATCAGGCAGAGACCGCACGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGAGTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCaaga                                                  <  8:8561/139‑3 (MQ=255)
                                                                                    gCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAagag                                                 <  4:393557/139‑1 (MQ=255)
                                                                                    gCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAagag                                                 <  4:359839/139‑1 (MQ=255)
                                                                                        tttttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtc                                             >  1:217526/1‑139 (MQ=255)
                                                                                          tttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcg                                            >  3:163043/1‑138 (MQ=255)
                                                                                          tttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcg                                            >  1:323644/1‑138 (MQ=255)
                                                                                           ttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcgt                                           <  2:342685/138‑1 (MQ=255)
                                                                                           ttCAGGAAGAGAACGCAGGATATATGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcgt                                           <  1:164147/138‑1 (MQ=255)
                                                                                              aGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAgg                                        <  2:323644/138‑1 (MQ=255)
                                                                                              aGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAgg                                        <  4:163043/138‑1 (MQ=255)
                                                                                                 cagaGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGTTTTTATCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCAtt                                    <  1:407719/136‑1 (MQ=255)
                                                                                                 cagaGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCAtt                                    <  2:359369/136‑1 (MQ=255)
                                                                                                      aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt                               <  5:154597/139‑1 (MQ=255)
                                                                                                      aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt                               <  4:1627/139‑1 (MQ=255)
                                                                                                      aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt                               <  8:167644/139‑1 (MQ=255)
                                                                                                      aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt                               <  2:252287/139‑1 (MQ=255)
                                                                                                      aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt                               <  7:29133/139‑1 (MQ=255)
                                                                                                      aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGAGAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt                               <  5:353560/139‑1 (MQ=255)
                                                                                                          cAGGAAATCTGTATCATAGATCACGGCTTTCGGCTGATAAAACGCACCGAATAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa                           >  4:220272/1‑139 (MQ=255)
                                                                                                          cAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa                           >  8:440742/1‑139 (MQ=255)
                                                                                                          cAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa                           >  2:242351/1‑139 (MQ=255)
                                                                                                           aGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAAt                          <  3:324714/139‑1 (MQ=255)
                                                                                                             gAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCa                        <  1:368039/139‑1 (MQ=255)
                                                                                                                   tGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                                                     <  4:259286/72‑1 (MQ=255)
                                                                                                                   tGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                                                     >  3:259286/1‑72 (MQ=255)
                                                                                                                     tATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCcgcg                >  2:426510/1‑139 (MQ=255)
                                                                                                                     tATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCcgcg                >  7:249312/1‑139 (MQ=255)
                                                                                                                     tATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGATACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCcg                  <  8:432426/137‑1 (MQ=255)
                                                                                                                            gagCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATaa           >  1:438202/1‑137 (MQ=255)
                                                                                                                             agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                                                  <  7:286751/81‑2 (MQ=255)
                                                                                                                             agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                                                  >  8:286751/1‑80 (MQ=255)
                                                                                                                             agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATgcgc                                                       >  7:366010/1‑92 (MQ=255)
                                                                                                                             agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATgcgc                                                       <  8:366010/92‑1 (MQ=255)
                                                                                                                             agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAg        >  8:62294/1‑139 (MQ=255)
                                                                                                                             agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAg        >  2:253793/1‑139 (MQ=255)
                                                                                                                             agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAg        >  7:273519/1‑139 (MQ=255)
                                                                                                                               cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAATCGGATGCTTCACGGCTACTTATCCTCCGCCTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCTTTTGGATGAAATCAATGACGAGCATAAAAGTg      >  7:202528/1‑139 (MQ=255)
                                                                                                                               cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCa                                                            >  7:372266/1‑85 (MQ=255)
                                                                                                                               cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCa                                                            <  8:372266/85‑1 (MQ=255)
                                                                                                                               cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTg      >  6:135540/1‑139 (MQ=255)
                                                                                                                               cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTg      >  2:21817/1‑139 (MQ=255)
                                                                                                                               cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTg      >  8:165713/1‑139 (MQ=255)
                                                                                                                                 cGGCTTTAGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTgg     >  8:102816/1‑138 (MQ=255)
                                                                                                                                  ggCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTA‑CTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAg  >  8:216079/1‑139 (MQ=255)
                                                                                                                                     |                                                                                                                                        
GTGAGCGGATATTCAGCAGCTCTTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGATCGAAGCTCTTTTTCAGGCAAAGAACGCAGGAAGTCTGTATCGTAGAGCACGGCCTTCGGCTGATAAAATGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCAATGCCGCGCATAAAAGTGGCAG  >  CP006881/2196350‑2196619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A