Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F56 I20 R2
|
1958 |
92.1 |
3575798 |
91.1% |
3257551 |
126.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
2,196,540 |
C→T |
K142K (AAG→AAA) |
U712_11005 ← |
3‑dehydroquinate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 2,196,540 | 0 | C | T | 98.0%
| 294.4
/ ‑3.2
| 98 | K142K (AAG→AAA) | U712_11005 | 3‑dehydroquinate synthase |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (41/55); total (42/56) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 |
GTTTAATCACTTCTGCCATTCCGGATCGAAGCTCTTTTTCAGGCAAAGAACGCAGGAAGTCTGTATCGTAGAGCACGGCCTTCGGCTGATAAAATGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCTCCTACAACACCGCCACCGAACGCGATGATGCATG > CP006881/2196404‑2196673
|
gtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACttt > 3:448777/1‑139 (MQ=255)
tttAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACttt > 7:121296/1‑138 (MQ=255)
tGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg > 5:370104/1‑138 (MQ=255)
tGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg < 4:448777/139‑2 (MQ=255)
ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACTCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg < 5:306433/137‑2 (MQ=255)
ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg < 1:162746/137‑2 (MQ=255)
ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg < 1:155432/137‑2 (MQ=255)
ccGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAAACTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGAGTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCAt > 8:190281/1‑139 (MQ=255)
ccGGACCTAAGCTC‑TTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATg > 1:252287/1‑139 (MQ=255)
gacctaaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATgcg > 7:379374/6‑139 (MQ=255)
aaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGcc > 6:399022/1‑136 (MQ=255)
aGCTCTTTATCAGGCAGAGACCGCACGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGAGTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCaaga < 8:8561/139‑3 (MQ=255)
gCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAagag < 4:393557/139‑1 (MQ=255)
gCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAagag < 4:359839/139‑1 (MQ=255)
tttttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtc > 1:217526/1‑139 (MQ=255)
tttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcg > 1:323644/1‑138 (MQ=255)
tttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcg > 3:163043/1‑138 (MQ=255)
ttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcgt < 2:342685/138‑1 (MQ=255)
ttCAGGAAGAGAACGCAGGATATATGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcgt < 1:164147/138‑1 (MQ=255)
aGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAgg < 2:323644/138‑1 (MQ=255)
aGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAgg < 4:163043/138‑1 (MQ=255)
cagaGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGTTTTTATCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCAtt < 1:407719/136‑1 (MQ=255)
cagaGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCAtt < 2:359369/136‑1 (MQ=255)
aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt < 7:29133/139‑1 (MQ=255)
aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt < 5:154597/139‑1 (MQ=255)
aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt < 4:1627/139‑1 (MQ=255)
aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt < 8:167644/139‑1 (MQ=255)
aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt < 2:252287/139‑1 (MQ=255)
aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGAGAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt < 5:353560/139‑1 (MQ=255)
cAGGAAATCTGTATCATAGATCACGGCTTTCGGCTGATAAAACGCACCGAATAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa > 4:220272/1‑139 (MQ=255)
cAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa > 8:440742/1‑139 (MQ=255)
cAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa > 2:242351/1‑139 (MQ=255)
aGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAAt < 3:324714/139‑1 (MQ=255)
gAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCa < 1:368039/139‑1 (MQ=255)
tATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCcgcg > 7:249312/1‑139 (MQ=255)
tATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCcgcg > 2:426510/1‑139 (MQ=255)
tATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGATACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCcg < 8:432426/137‑1 (MQ=255)
gagCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATaa > 1:438202/1‑137 (MQ=255)
agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg < 7:286751/81‑2 (MQ=255)
agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg > 8:286751/1‑80 (MQ=255)
agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATgcgc > 7:366010/1‑92 (MQ=255)
agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATgcgc < 8:366010/92‑1 (MQ=255)
agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAg > 8:62294/1‑139 (MQ=255)
agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAg > 7:273519/1‑139 (MQ=255)
agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAg > 2:253793/1‑139 (MQ=255)
cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAATCGGATGCTTCACGGCTACTTATCCTCCGCCTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCTTTTGGATGAAATCAATGACGAGCATAAAAGTg > 7:202528/1‑139 (MQ=255)
cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCa > 7:372266/1‑85 (MQ=255)
cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCa < 8:372266/85‑1 (MQ=255)
cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTg > 2:21817/1‑139 (MQ=255)
cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTg > 8:165713/1‑139 (MQ=255)
cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTg > 6:135540/1‑139 (MQ=255)
cGGCTTTAGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTgg > 8:102816/1‑138 (MQ=255)
ggCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTA‑CTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAg > 8:216079/1‑139 (MQ=255)
tCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCca > 4:214099/1‑138 (MQ=255)
tCGGCTGATAAAACGCACCGATTAGATTTTTTCAAAGCGGATGGTTCACGGATACTTTTCCTCCGACTGCGCTGTCATGCGCAAAGAGCGTCGTATGCATTTGGATGAAATCAATGCCGAGCATAAAAGTGGAAGCca > 8:214957/1‑138 (MQ=255)
ataataCGCACAGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTTCTTTTCCTCCGAGTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGATATCAATGCCGCGCTTAAAAGTGGCAGCCACaaaag < 8:202528/137‑2 (MQ=255)
aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATg < 6:158118/109‑1 (MQ=255)
aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATg > 5:158118/1‑109 (MQ=255)
aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCg > 7:133392/1‑139 (MQ=255)
aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCg > 5:126798/1‑139 (MQ=255)
aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCg > 8:25835/1‑139 (MQ=255)
aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCg > 3:141528/1‑139 (MQ=255)
aacgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCaa < 7:260560/136‑1 (MQ=255)
acgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGc > 7:28805/3‑136 (MQ=255)
ctcACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGTCTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa < 6:422185/137‑1 (MQ=255)
cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCTCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa < 4:184973/138‑1 (MQ=255)
cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa < 8:121296/138‑1 (MQ=255)
cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa < 1:426510/138‑1 (MQ=255)
cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa < 6:370104/138‑1 (MQ=255)
cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa < 7:21880/138‑1 (MQ=255)
cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGGAGGCATTTGGATGAAATCAAAGGCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa < 6:219837/138‑1 (MQ=255)
cgCAACGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa < 7:214957/138‑1 (MQ=255)
cACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtc < 7:102816/139‑1 (MQ=255)
cACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtc < 8:54104/139‑1 (MQ=255)
cACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtc < 1:242351/139‑1 (MQ=255)
cACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtc < 8:408987/139‑1 (MQ=255)
cACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtc < 7:354896/139‑1 (MQ=255)
cACCGATTAGATTATTTCCAAGCGGATGGTTAACGGCTACTTTTCCTCCGACTGAGCTGTCATGCGCCAAGAGAGTAGTATGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACAGGCAAGAtc < 2:235481/139‑1 (MQ=255)
ccGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAACACCGGCAAGAtccc > 5:37708/1‑137 (MQ=255)
ccGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtccc > 2:113891/1‑137 (MQ=255)
ccGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCGCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCTTTTGGATGAAATCAATGCCGCGCTTAAAAGTGGCAGCCACAACACCGGCAAGAtccc > 8:269711/1‑137 (MQ=255)
cGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATcccc < 7:143734/139‑1 (MQ=255)
aGATTTTTTCCAAGCGGATGGTTCACGGCTA‑CTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTacaa < 7:216079/138‑1 (MQ=255)
ttttttCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAacac > 6:77674/1‑139 (MQ=255)
ttCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCa < 2:61405/47‑1 (MQ=255)
ttCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCa > 1:61405/1‑47 (MQ=255)
ttCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCAtt > 1:427298/1‑71 (MQ=255)
ttCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCAtt < 2:427298/71‑1 (MQ=255)
ttCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGcc > 7:142508/1‑139 (MQ=255)
ccaaGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTCCCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCa < 2:438202/135‑1 (MQ=255)
aGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa < 4:433942/117‑1 (MQ=255)
aGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa > 3:433942/1‑117 (MQ=255)
aTGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAAtgcg < 5:399022/139‑1 (MQ=255)
ggTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCga < 1:380891/138‑1 (MQ=255)
ggTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCga < 5:385921/138‑1 (MQ=255)
gTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgat < 7:408753/138‑1 (MQ=255)
ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga < 8:379374/139‑1 (MQ=255)
ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga < 1:289843/139‑1 (MQ=255)
ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga < 7:127623/139‑1 (MQ=255)
gCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATg < 3:214099/139‑1 (MQ=255)
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GTTTAATCACTTCTGCCATTCCGGATCGAAGCTCTTTTTCAGGCAAAGAACGCAGGAAGTCTGTATCGTAGAGCACGGCCTTCGGCTGATAAAATGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCTCCTACAACACCGCCACCGAACGCGATGATGCATG > CP006881/2196404‑2196673
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
