Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,196,660 C→T A102A (GCG→GCA)  U712_11005 ← 3‑dehydroquinate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,196,6600CT98.9% 287.0 / NA 92A102A (GCG→GCA) U712_110053‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (49/42);  minor base G (1/0);  total (50/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCTCCTACAACACCGCCACCGAACGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAGTTTTGTGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTTTCACGGGCCATTTTTCTTGCAGCAAA  >  CP006881/2196525‑2196795
                                                                                                                                       |                                                                                                                                       
aTGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAAtgcg                                                                                                                                      <  5:399022/139‑1 (MQ=255)
  ggTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCga                                                                                                                                     <  5:385921/138‑1 (MQ=255)
  ggTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCga                                                                                                                                     <  1:380891/138‑1 (MQ=255)
   gTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgat                                                                                                                                    <  7:408753/138‑1 (MQ=255)
    ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga                                                                                                                                  <  8:379374/139‑1 (MQ=255)
    ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga                                                                                                                                  <  1:289843/139‑1 (MQ=255)
    ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga                                                                                                                                  <  7:127623/139‑1 (MQ=255)
          gCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATg                                                                                                                            <  3:214099/139‑1 (MQ=255)
              cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTCCACCACCGCCCCCGAAGGCGATGATGCATgag                                                                                                                          >  7:175879/3‑137 (MQ=255)
              cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgag                                                                                                                          >  4:89521/3‑137 (MQ=255)
              cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgag                                                                                                                          >  2:280845/3‑137 (MQ=255)
              cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgag                                                                                                                          >  7:209444/3‑137 (MQ=255)
               ttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgaggag                                                                                                                       <  1:280845/138‑1 (MQ=255)
                 ttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgaggag                                                                                                                       <  7:62294/137‑1 (MQ=255)
                            gcgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGa                                                                                                           >  7:21420/4‑138 (MQ=255)
                             cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCCCCGAATGCGATGATGCATGAGGAGCGATCCATATGaa                                                                                                          >  1:61160/3‑138 (MQ=255)
                             cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGaa                                                                                                          >  6:375359/3‑138 (MQ=255)
                             cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCCCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGaa                                                                                                          >  6:96951/3‑138 (MQ=255)
                                tGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACg                                                                                                      <  8:249312/139‑1 (MQ=255)
                                       cgcCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCt                                                                                               >  8:177498/1‑139 (MQ=255)
                                        gcCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCtt                                                                                              <  7:165713/139‑1 (MQ=255)
                                        gcCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGGGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCtt                                                                                              <  1:253793/139‑1 (MQ=255)
                                          cAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCa                                                                                            <  8:28805/139‑1 (MQ=255)
                                            agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAACACCGCCAAGATCCCCTACAACACCCCCACCGAATGCGATGATGCATGAGGAGCGATCCAAATGAAAACGAATCGCTTCAct                                                                                          >  4:114398/3‑139 (MQ=255)
                                            agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCAt                                                                                                                             >  8:99557/3‑104 (MQ=255)
                                            agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCAt                                                                                                                             <  7:99557/102‑1 (MQ=255)
                                            agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                                                                                          >  8:171432/3‑139 (MQ=255)
                                            agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                                                                                          >  3:79396/3‑139 (MQ=255)
                                            agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                                                                                          >  5:107963/3‑139 (MQ=255)
                                            agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                                                                                          <  5:135540/137‑1 (MQ=255)
                                            agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGAGATCCATATGAAAACGAATCGCTTCAct                                                                                          >  7:425750/3‑139 (MQ=255)
                                            agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGAGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCCct                                                                                          >  7:168896/3‑139 (MQ=255)
                                                 gtcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCa                                                                                     <  1:21817/139‑1 (MQ=255)
                                                  tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGaa                                                                                                    <  7:121582/123‑1 (MQ=255)
                                                  tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGaa                                                                                                    >  8:121582/1‑123 (MQ=255)
                                                  tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCaa                                                                                    >  7:316763/1‑138 (MQ=255)
                                                    gtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTTGCATCCACAAAACCGGCAAGATACCCGACCACACCGCCACCGAATGCGATGATTCATGAGGAGCGATCCATATTAAAACGAATCGCTTCACTCTTCAAtt                                                                                  >  8:272765/1‑139 (MQ=255)
                                                    gtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAAtt                                                                                  <  4:141528/139‑1 (MQ=255)
                                                    gtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAAtt                                                                                  <  7:177498/139‑1 (MQ=255)
                                                       ggCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAAtttt                                                                                <  2:217526/138‑1 (MQ=255)
                                                          aTTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCAACAAATGCGATGATGCATCAGGAGCGATACATATAAAAACGAAACGCTTAACTCTGCAATTTtgtg                                                                             >  3:76172/1‑138 (MQ=255)
                                                           tttGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTa                                                                           >  7:128876/1‑139 (MQ=255)
                                                            ttGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGCGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTa                                                                           >  1:166616/1‑138 (MQ=255)
                                                             tGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCg                                                                                                                     <  8:69582/95‑1 (MQ=255)
                                                             tGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCg                                                                                                                     >  7:69582/1‑95 (MQ=255)
                                                             tGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGAGGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACa                                                                         >  3:440501/1‑139 (MQ=255)
                                                                   aaaTCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCa                                                                   <  6:126798/139‑1 (MQ=255)
                                                                    aaTCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCa                                                                   <  8:21420/138‑1 (MQ=255)
                                                                     aTCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATg                                                                 >  6:309372/1‑139 (MQ=255)
                                                                        aaTGCCGCGCATAAAAGTCGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGAt                                                              <  7:440742/139‑1 (MQ=255)
                                                                              gcgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTAc                                                                          >  1:114290/1‑121 (MQ=255)
                                                                              gcgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTAc                                                                          <  2:114290/121‑1 (MQ=255)
                                                                              gcgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGcc                                                        <  8:209444/139‑1 (MQ=255)
                                                                               cgcATAAAAGTGGCAGCCACAAACCCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCt                                                       <  8:175879/139‑1 (MQ=255)
                                                                               cgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCt                                                       >  7:222674/1‑139 (MQ=255)
                                                                               cgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCt                                                       >  8:1719/1‑139 (MQ=255)
                                                                               cgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCt                                                       >  8:197165/1‑139 (MQ=255)
                                                                                gcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCa                                                                   <  8:19544/126‑1 (MQ=255)
                                                                                gcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCa                                                                   >  7:19544/1‑126 (MQ=255)
                                                                                  aTAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGct                                                    <  3:89521/139‑1 (MQ=255)
                                                                                     taaGTGGCAGCCACAAAACCGGCAAGATCCCCTACCACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCCTATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGctct                                                  <  7:190281/137‑1 (MQ=255)
                                                                                     aaaGTGGCAGCCCCAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGctct                                                  <  8:168896/138‑1 (MQ=255)
                                                                                     aaaGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGctct                                                  <  7:171432/138‑1 (MQ=255)
                                                                                           gCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCg                                           >  5:388453/1‑139 (MQ=255)
                                                                                            cAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCgg                                          <  6:388453/139‑1 (MQ=255)
                                                                                                   aaacCCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGAGGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTc                                   <  8:273519/139‑1 (MQ=255)
                                                                                                   aaaaCCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTc                                   <  5:309372/139‑1 (MQ=255)
                                                                                                          gCAAGATCCCCTACAACCCCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCCCttttt                            >  2:430434/1‑139 (MQ=255)
                                                                                                                   ccTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGc                    >  8:96948/1‑138 (MQ=255)
                                                                                                                   ccTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGc                    >  3:425955/1‑138 (MQ=255)
                                                                                                                    cTACAACACCGCCACCGAATGCGATGATGCATgaggag                                                                                                                       >  5:25792/1‑38 (MQ=255)
                                                                                                                    cTACAACACCGCCACCGAATGCGATGATGCATgaggag                                                                                                                       <  6:25792/38‑1 (MQ=255)
                                                                                                                          cacCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGc                                                         >  2:194490/1‑94 (MQ=255)
                                                                                                                          cacCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGc                                                         <  1:194490/94‑1 (MQ=255)
                                                                                                                          cacCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTc            >  4:330023/1‑139 (MQ=255)
                                                                                                                          cacCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATATTGTGTACATGACCATGGATTTTGCCTGCTCTCCACTCGGTACCGGCCCTTTTTTCACAGGCCATTTTTc            >  5:56828/1‑139 (MQ=255)
                                                                                                                             cGCCACCGCATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACCTGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg         >  2:232100/1‑139 (MQ=255)
                                                                                                                             cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGct                                                    <  1:394165/96‑1 (MQ=255)
                                                                                                                             cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGct                                                    >  2:394165/1‑96 (MQ=255)
                                                                                                                             cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg         >  5:370617/1‑139 (MQ=255)
                                                                                                                             cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg         >  6:176561/1‑139 (MQ=255)
                                                                                                                             cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg         >  4:337066/1‑139 (MQ=255)
                                                                                                                             cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg         >  6:49484/1‑139 (MQ=255)
                                                                                                                             cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg         >  8:365142/1‑139 (MQ=255)
                                                                                                                             cGCCACCGAATGCGATGATGAATGAGGAGCTCTCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTACAGGTATTTTGCCTGCTCTCCAGACGGTACCGTCACGTTTTTGACAGTCCATTTTTCGTg         >  4:210943/1‑139 (MQ=255)
                                                                                                                              gCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTgc        <  5:77674/139‑1 (MQ=255)
                                                                                                                               ccACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTAc                                                                          <  8:178493/72‑1 (MQ=255)
                                                                                                                               ccACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTAc                                                                          >  7:178493/1‑72 (MQ=255)
                                                                                                                               ccACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTgca       >  3:386991/1‑139 (MQ=255)
                                                                                                                               ccACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTgca       >  4:2779/1‑139 (MQ=255)
                                                                                                                               ccACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg         >  1:401595/1‑137 (MQ=255)
                                                                                                                                    gAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCaaa  <  7:197165/139‑1 (MQ=255)
                                                                                                                                    gAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCaaa  <  8:316763/139‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
ATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCTCCTACAACACCGCCACCGAACGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAGTTTTGTGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTTTCACGGGCCATTTTTCTTGCAGCAAA  >  CP006881/2196525‑2196795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A