Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F56 I20 R2	1958	92.1	3575798	91.1%	3257551	126.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,196,854	G→T	R38R (CGG→AGG)	U712_11005 ←	3‑dehydroquinate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,196,854	0	G	T	100.0%	262.9 / NA	83	R38R (CGG→AGG)	U712_11005	3‑dehydroquinate synthase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (38/45); total (38/45)

TGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTTTCACGGGCCATTTTTCTTGCAGCAAATGAAGCATTTCATCACCATACAGGCGGTCAACCTCTTCATCCGTGACAAGCATAATCCGTGTTAAAGGCCTGTTTAGAGAGTTTAATAGTTCGCAAACCTCTTTTCTGATGCCTTGTCCGATAAAAACAGGATACGACGAGGAAGCGGTTTGAACATGCAGTGTTTTCATTAAAATTCCCTCGACAGTTTTCTC  >  CP006881/2196719‑2196989

tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCCCAGGCCATATTTCTTGCCGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCAGACGTGACACACATAATCCttgt                                                                                                                                      >  8:58997/1‑139 (MQ=255)

tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCttgt                                                                                                                                      >  3:78654/1‑139 (MQ=255)

  tACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGtt                                                                                                                                     >  4:176787/1‑138 (MQ=255)

      tGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                                                <  1:113891/139‑1 (MQ=255)

      tGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                                                <  8:142508/139‑1 (MQ=255)

      tGTCCATGGATTTTGCCTGCGCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                                                <  7:269711/139‑1 (MQ=255)

        tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCCCTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACATCTTCATCCCTGACAAACATAATCCTAGTTAAAGccc                                                                                                                              >  1:329722/1‑139 (MQ=255)

        tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTACAGGc                                                                                                                               <  3:220272/138‑1 (MQ=255)

        tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                               <  5:49484/138‑1 (MQ=255)

        tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                               <  4:425955/138‑1 (MQ=255)

        tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                               <  7:1719/138‑1 (MQ=255)

        tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                               <  1:232100/138‑1 (MQ=255)

        tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                               <  1:430434/138‑1 (MQ=255)

         ccATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCt                                                                                                                             <  8:222674/139‑1 (MQ=255)

         ccATGGATTATGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCt                                                                                                                             <  2:61160/139‑1 (MQ=255)

              gATTTTTCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCAACATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTa                                                                                                                        <  1:183336/139‑1 (MQ=255)

                ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTTCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGCTTaaa                                                                                                                      <  5:144746/139‑3 (MQ=255)

                ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                                      <  8:390072/139‑3 (MQ=255)

                ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                                      <  5:176561/139‑3 (MQ=255)

                ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                                      <  7:96948/139‑3 (MQ=255)

                ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                                      <  3:309934/139‑3 (MQ=255)

                 tttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                                                <  2:444158/125‑1 (MQ=255)

                 tttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                                                >  1:444158/4‑128 (MQ=255)

                 tttgCCTGCTCTCCACTCGGTACCGTCACTTTATTCTCAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTGCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                                      <  3:114398/135‑3 (MQ=255)

                  ttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTAACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaaga                                                                                                                    >  7:221057/3‑139 (MQ=255)

                         ctctCCACTCGGTACCGTCTCTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAAt                                                                                                             <  5:96951/139‑1 (MQ=255)

                         ctctCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTaa                                                                                                              >  7:14756/1‑138 (MQ=255)

                                   ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCa                                                                                                     <  8:407860/134‑1 (MQ=255)

                                   ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCAGACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGGTTAAAGAGGTTAATAGTTCGCaag                                                                                                   >  3:421366/4‑138 (MQ=255)

                                    gtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCAAACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCATTGTTAAAGGCCAGTTTAAAGAGGTTAATAGTTCGCaagg                                                                                                  >  1:377173/3‑137 (MQ=255)

                                     taCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                                      <  6:163293/117‑3 (MQ=255)

                                     taCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                                      >  5:163293/2‑116 (MQ=255)

                                      aCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCGTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCct                                                                                                >  2:259210/1‑139 (MQ=255)

                                       ccGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCctt                                                                                               >  5:352448/1‑138 (MQ=255)

                                        cGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCcttt                                                                                              >  5:184646/1‑137 (MQ=255)

                                         gTCACTTTTTTCACAGGACATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGGTAATAGTTCGCAAGCCtttt                                                                                             <  3:210943/139‑1 (MQ=255)

                                          tCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTtttt                                                                                            >  7:178163/1‑139 (MQ=255)

                                          tCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTtttt                                                                                            >  3:394352/1‑139 (MQ=255)

                                           cccTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCtttttt                                                                                           <  4:78654/137‑1 (MQ=255)

                                               tttttCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCTGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                               <  6:52283/99‑1 (MQ=255)

                                               tttttCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                               >  5:52283/1‑99 (MQ=255)

                                                       aggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTa                                                                                                                                    <  6:203689/85‑1 (MQ=255)

                                                       aggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTa                                                                                                                                    >  5:203689/2‑86 (MQ=255)

                                                       aggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGt                                                                               <  6:352448/138‑1 (MQ=255)

                                                        ggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTc                                                                              >  5:132045/1‑139 (MQ=255)

                                                                  cTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCAGTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTTATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                                     <  6:370617/138‑1 (MQ=255)

                                                                     gcagcaAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAAc                                                                    <  7:272765/136‑1 (MQ=255)

                                                                                aGCATTTCATCACCATACAGGCGGTCCCCTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAgg                                                      >  5:437481/1‑139 (MQ=255)

                                                                                  cctttCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGaa                                                    <  8:133392/137‑1 (MQ=255)

                                                                                  cATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGaa                                                    <  8:178163/139‑1 (MQ=255)

                                                                                       catcaCCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGt                                               >  5:5800/1‑139 (MQ=255)

                                                                                           aCCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGa                                           <  4:394352/139‑1 (MQ=255)

                                                                                               tACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCtttt                                                                                             <  4:11015/85‑1 (MQ=255)

                                                                                               tACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACAt                                       >  4:180980/1‑139 (MQ=255)

                                                                                                  aGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCa                                    <  4:79396/139‑1 (MQ=255)

                                                                                                    gCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgt                                  >  2:435076/1‑139 (MQ=255)

                                                                                                    gCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCATTTTTTCTGATACCTTGt                                                                               >  6:332648/1‑94 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                                      <  1:328754/52‑3 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGAt                                                                          >  5:74050/1‑96 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                                     <  5:312817/101‑1 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                                     >  1:187419/1‑101 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                                     <  2:187419/101‑1 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                                     >  6:312817/1‑101 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc                               >  3:110896/1‑138 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc                               >  3:173230/1‑138 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc                               >  3:372414/1‑138 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAAAAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc                               >  7:337331/1‑138 (MQ=255)

                                                                                                       gTCCACTTCTTCATCCGTGACAAACATAATCATTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTAGCAAGCCTGATTTCTGATACCTTGTCCTATAAAAAAATGATATGACGAGGAAGCAGTTTGAACATGCAgtgct                               >  7:334605/1‑137 (MQ=255)

                                                                                                         ccacatctTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATCCAGTGtctt                             >  4:16210/6‑139 (MQ=255)

                                                                                                                  cATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAAt                    >  7:424264/1‑139 (MQ=255)

                                                                                                                  cATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGCATATTACGAGGAAGCAGTTTGCACATGCAGTGTCTTCATTAAAAt                    >  1:1517/1‑139 (MQ=255)

                                                                                                                         gACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                                     <  5:200467/83‑1 (MQ=255)

                                                                                                                         gACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                                     >  6:200467/1‑83 (MQ=255)

                                                                                                                         gACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTc              >  7:18319/1‑138 (MQ=255)

                                                                                                                          aCAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAg                                                   >  7:62946/1‑100 (MQ=255)

                                                                                                                          aCAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAg                                                   <  8:62946/100‑1 (MQ=255)

                                                                                                                          aCAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAAc                                         >  7:370406/1‑110 (MQ=255)

                                                                                                                          aCAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAAc                                         <  8:370406/110‑1 (MQ=255)

                                                                                                                          aCAAACATAATCCTTGTTAAAGGCCTCTTTAAAGAGGTTAATAGTTCGAAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGAAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGa            >  7:119463/1‑139 (MQ=255)

                                                                                                                           cAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGGCTTCATTAAAATTCCCTCGa            <  6:56828/138‑1 (MQ=255)

                                                                                                                             aacATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAg         >  8:32791/3‑139 (MQ=255)

                                                                                                                             aacATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAg         <  2:401595/137‑1 (MQ=255)

                                                                                                                               cATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGtt       <  2:377173/139‑1 (MQ=255)

                                                                                                                               cATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGtt       <  1:435076/139‑1 (MQ=255)

                                                                                                                                    tCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTtctc  <  3:176787/139‑1 (MQ=255)

TGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTTTCACGGGCCATTTTTCTTGCAGCAAATGAAGCATTTCATCACCATACAGGCGGTCAACCTCTTCATCCGTGACAAGCATAATCCGTGTTAAAGGCCTGTTTAGAGAGTTTAATAGTTCGCAAACCTCTTTTCTGATGCCTTGTCCGATAAAAACAGGATACGACGAGGAAGCGGTTTGAACATGCAGTGTTTTCATTAAAATTCCCTCGACAGTTTTCTC  >  CP006881/2196719‑2196989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A