Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,549 A→G L121L (CTA→CTG)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,5490AG100.0% 290.4 / NA 89L121L (CTA→CTG) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (50/39);  total (50/39)

ACGGAGGCGGAGATTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCAT‑‑‑‑‑TCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCT  >  CP006881/3723416‑3723683
                                                                                                                                     |                                                                                                                                           
aCGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTg                                                                                                                                         <  2:243850/138‑1 (MQ=255)
aCGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTg                                                                                                                                         <  2:174508/138‑1 (MQ=255)
aCGGAGGCGGAGATTTATTTACCGGCAACACCTTTTACTACACCTCTCCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTg                                                                                                                                         <  3:236184/138‑1 (MQ=255)
aCGGAGGCGGAGATTTATTTACCGCCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTg                                                                                                                                         <  2:257626/138‑1 (MQ=255)
 cGGAGGCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGcc                                                                                                                                       <  8:75424/139‑1 (MQ=255)
    cggCGGAGATTTATTTACCGGCAAAACCTATTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAtc                                                                                                                                    <  2:200709/138‑2 (MQ=255)
      gCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCt                                                                                                                             >  5:432757/1‑139 (MQ=255)
         gagaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGAt                                                                                                                          <  8:262136/139‑1 (MQ=255)
                     ccggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACggg                                                                                                              <  5:393311/137‑1 (MQ=255)
                      cggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACggga                                                                                                             >  1:342313/2‑138 (MQ=255)
                      cggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACggga                                                                                                             >  7:3981/2‑138 (MQ=255)
                               cttttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                    <  8:3981/138‑1 (MQ=255)
                                  ttATTTCACCTATCCCGCGCACCGGAAAAAATTCAGCTGCCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                  <  2:349270/138‑1 (MQ=255)
                                  ttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                  <  4:159934/138‑1 (MQ=255)
                                  ttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGGCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                  <  1:367980/138‑1 (MQ=255)
                                     tttCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCt                                                                                              <  1:180707/139‑1 (MQ=255)
                                     tttCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCt                                                                                              <  5:421773/139‑1 (MQ=255)
                                         acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTTGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                    <  5:375514/126‑1 (MQ=255)
                                         acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAtc                                                                                                                                    <  2:360701/99‑2 (MQ=255)
                                         acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                    >  6:375514/4‑129 (MQ=255)
                                         acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTg                                                                                          >  5:377687/4‑139 (MQ=255)
                                         acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACCGGACGTTTTGAGGAGCCTTCtt                                                                                          >  3:63659/4‑138 (MQ=255)
                                         acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGCCAATTTAATCGGCGCCATTCTGTTTGCCAtc                                                                                                                                    >  1:360701/4‑101 (MQ=255)
                                          cctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGt                                                                                         <  5:81552/137‑1 (MQ=255)
                                              taCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCAt                                                                                     >  4:55376/1‑139 (MQ=255)
                                                ccGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTc                                                                                   <  7:203793/139‑1 (MQ=255)
                                                   cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                >  3:352411/1‑139 (MQ=255)
                                                   cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                >  6:424047/1‑139 (MQ=255)
                                                   cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                >  8:305156/1‑139 (MQ=255)
                                                   cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTAAATCGGCGCCATTCTGTTAGCCAT‑‑‑‑‑CCTGATCAGAGCGACGGCACTTTTTGACGAGCCTTCTGTTCATTACtt                                                                                >  6:48832/1‑139 (MQ=255)
                                                     cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTACTCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                              >  6:18166/1‑139 (MQ=255)
                                                     cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                              >  1:411756/1‑139 (MQ=255)
                                                     cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                              >  1:31686/1‑139 (MQ=255)
                                                         ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAt                                                                          <  6:432757/137‑1 (MQ=255)
                                                         ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGAGCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAt                                                                          <  1:43225/137‑1 (MQ=255)
                                                                   cagCTGGCGCGACACCCTATACTTGTGGATGTCAAGCAATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                <  2:342313/137‑1 (MQ=255)
                                                                    agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                <  2:31686/137‑1 (MQ=255)
                                                                    agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCAGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                <  1:108979/137‑1 (MQ=255)
                                                                         gcgcGACACCCTATACTTGTGGATGTCAAGCTATGCCAGCAATTTAATCGGCGCCATTCTGTTTGCAAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGca                                                           >  5:6169/1‑138 (MQ=255)
                                                                                    tatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgcc                                               >  4:297035/3‑139 (MQ=255)
                                                                                           gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCCTGTCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgc                                             >  4:343327/1‑139 (MQ=255)
                                                                                           gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                    >  4:363790/1‑79 (MQ=255)
                                                                                           gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                    <  3:363790/79‑1 (MQ=255)
                                                                                           gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                        >  6:149164/1‑139 (MQ=255)
                                                                                           gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                        >  4:29872/1‑139 (MQ=255)
                                                                                           gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                        >  1:57707/1‑139 (MQ=255)
                                                                                           gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                        >  5:360944/1‑139 (MQ=255)
                                                                                           gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                        >  5:265763/1‑139 (MQ=255)
                                                                                           gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                        >  7:254586/1‑139 (MQ=255)
                                                                                           gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCGGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                        >  3:148498/1‑139 (MQ=255)
                                                                                           ggagATGTCAAGCTATGCCGGCAATTTAATCGGCGCCTTTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgccgg                                          <  8:254586/134‑3 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTg                                                                                                                                         >  7:229416/1‑46 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTg                                                                                                                                         <  8:229416/46‑1 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACgggac                                                                                                            >  7:329364/1‑68 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACgggac                                                                                                            <  8:329364/70‑3 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                  >  3:261438/1‑80 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                  <  4:261438/80‑1 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                            >  6:351177/1‑102 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                            <  5:351177/102‑1 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                       >  5:184337/1‑139 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                       >  7:214929/1‑139 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                       >  4:280961/1‑139 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                       >  7:393048/1‑139 (MQ=255)
                                                                                            tgGATGTCAAGCTATGCCGGCAATATAATCGGAGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCATCGCTAAGGTACTTTTTGAGGAGCCTACTGTTCATTACTTTTTGATTCATTTGGAAGAGCACAAAATGGAgccgccgccta                                       >  8:62414/1‑134 (MQ=255)
                                                                                            tgGATGTCAAGCTATCCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑ACTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGACCACAAAATGGAGCCGCCGGCtt                                       >  5:13240/1‑139 (MQ=255)
                                                                                              gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTga                                                                                                     <  1:142090/75‑1 (MQ=255)
                                                                                              gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTga                                                                                                     >  2:142090/1‑75 (MQ=255)
                                                                                              gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                <  3:148964/112‑1 (MQ=255)
                                                                                              gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                >  4:148964/1‑112 (MQ=255)
                                                                                              gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                           <  3:108495/117‑1 (MQ=255)
                                                                                              gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                           >  4:108495/1‑117 (MQ=255)
                                                                                              gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                     >  5:151933/1‑139 (MQ=255)
                                                                                              gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                     >  7:77555/1‑139 (MQ=255)
                                                                                              gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCGTcc                                     >  3:267139/1‑139 (MQ=255)
                                                                                                  tCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CATGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGaat                                 <  7:305156/139‑2 (MQ=255)
                                                                                                   cAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTGCCGaatt                                >  2:147440/1‑137 (MQ=255)
                                                                                                   cAAGCTATGCCGGCAATTTAATCGGCGCCATTCAGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                    >  4:353539/1‑71 (MQ=255)
                                                                                                   cAAGCTATGCCGGCAATTTAATCGGCGCCATTCAGTTTGCCAT‑‑‑‑‑CATGATCAGCGCGACGGGACTTTTTgag                                                                                                    <  3:353539/71‑1 (MQ=255)
                                                                                                         aTGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCTGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                          >  4:284862/1‑139 (MQ=255)
                                                                                                          tGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                          <  3:55376/138‑1 (MQ=255)
                                                                                                           gCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                          >  3:351032/1‑137 (MQ=255)
                                                                                                           gCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                          >  8:376780/1‑137 (MQ=255)
                                                                                                            ccGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCa                        <  6:184337/138‑1 (MQ=255)
                                                                                                               gCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCagag                     >  4:226915/1‑138 (MQ=255)
                                                                                                                cAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgga                   <  2:57707/139‑2 (MQ=255)
                                                                                                                cAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgg                    >  4:360245/1‑138 (MQ=255)
                                                                                                                   tttaagcGGCGCCATTCTGTGTCCCAG‑‑‑‑‑CCGGACCCGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATCCATTGGCCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATg                <  6:129006/133‑1 (MQ=255)
                                                                                                                       aTCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCtg             <  8:214929/138‑1 (MQ=255)
                                                                                                                                 ttCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTTGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCt  >  5:122145/1‑139 (MQ=255)
                                                                                                                                     |                                                                                                                                           
ACGGAGGCGGAGATTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCAT‑‑‑‑‑TCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCT  >  CP006881/3723416‑3723683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A