Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,558 T→C I124I (ATT→ATC)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,5580TC98.8% 262.8 / ‑5.0 84I124I (ATT→ATC) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (49/33);  total (51/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.54e-01

GCGGAGATTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCAT‑‑‑‑‑TCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCC  >  CP006881/3723422‑3723691
                                                                                                                                             |                                                                                                                                     
gCGGAGATTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCt                                                                                                                                     >  5:432757/1‑139 (MQ=255)
   gagaTTTATTTACCGGCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGAt                                                                                                                                  <  8:262136/139‑1 (MQ=255)
               ccggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACggg                                                                                                                      <  5:393311/137‑1 (MQ=255)
                cggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACggga                                                                                                                     >  7:3981/2‑138 (MQ=255)
                cggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACggga                                                                                                                     >  1:342313/2‑138 (MQ=255)
                         cttttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                            <  8:3981/138‑1 (MQ=255)
                            ttATTTCACCTATCCCGCGCACCGGAAAAAATTCAGCTGCCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                          <  2:349270/138‑1 (MQ=255)
                            ttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                          <  4:159934/138‑1 (MQ=255)
                            ttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGGCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                          <  1:367980/138‑1 (MQ=255)
                               tttCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCt                                                                                                      <  5:421773/139‑1 (MQ=255)
                               tttCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCt                                                                                                      <  1:180707/139‑1 (MQ=255)
                                   acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTTGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                            <  5:375514/126‑1 (MQ=255)
                                   acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                            >  6:375514/4‑129 (MQ=255)
                                   acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTg                                                                                                  >  5:377687/4‑139 (MQ=255)
                                   acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACCGGACGTTTTGAGGAGCCTTCtt                                                                                                  >  3:63659/4‑138 (MQ=255)
                                    cctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGt                                                                                                 <  5:81552/137‑1 (MQ=255)
                                        taCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCAt                                                                                             >  4:55376/1‑139 (MQ=255)
                                          ccGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTc                                                                                           <  7:203793/139‑1 (MQ=255)
                                             cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                        >  3:352411/1‑139 (MQ=255)
                                             cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                        >  6:424047/1‑139 (MQ=255)
                                             cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                        >  8:305156/1‑139 (MQ=255)
                                             cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTAAATCGGCGCCATTCTGTTAGCCAT‑‑‑‑‑CCTGATCAGAGCGACGGCACTTTTTGACGAGCCTTCTGTTCATTACtt                                                                                        >  6:48832/1‑139 (MQ=255)
                                               cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTACTCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                                      >  6:18166/1‑139 (MQ=255)
                                               cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                                      >  1:31686/1‑139 (MQ=255)
                                               cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                                      >  1:411756/1‑139 (MQ=255)
                                                   ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAt                                                                                  <  6:432757/137‑1 (MQ=255)
                                                   ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGAGCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAt                                                                                  <  1:43225/137‑1 (MQ=255)
                                                             cagCTGGCGCGACACCCTATACTTGTGGATGTCAAGCAATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                        <  2:342313/137‑1 (MQ=255)
                                                              agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                        <  2:31686/137‑1 (MQ=255)
                                                              agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCAGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                        <  1:108979/137‑1 (MQ=255)
                                                                   gcgcGACACCCTATACTTGTGGATGTCAAGCTATGCCAGCAATTTAATCGGCGCCATTCTGTTTGCAAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGca                                                                   >  5:6169/1‑138 (MQ=255)
                                                                              tatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgcc                                                       >  4:297035/3‑139 (MQ=255)
                                                                                     gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCCTGTCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgc                                                     >  4:343327/1‑139 (MQ=255)
                                                                                     gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                            <  3:363790/79‑1 (MQ=255)
                                                                                     gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                            >  4:363790/1‑79 (MQ=255)
                                                                                     gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                >  5:360944/1‑139 (MQ=255)
                                                                                     gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                >  5:265763/1‑139 (MQ=255)
                                                                                     gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                >  1:57707/1‑139 (MQ=255)
                                                                                     gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                >  6:149164/1‑139 (MQ=255)
                                                                                     gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                >  4:29872/1‑139 (MQ=255)
                                                                                     gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                >  7:254586/1‑139 (MQ=255)
                                                                                     gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCGGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                >  3:148498/1‑139 (MQ=255)
                                                                                     ggagATGTCAAGCTATGCCGGCAATTTAATCGGCGCCTTTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgccgg                                                  <  8:254586/134‑3 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACgggac                                                                                                                    <  8:329364/70‑3 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACgggac                                                                                                                    >  7:329364/1‑68 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                          >  3:261438/1‑80 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                          <  4:261438/80‑1 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                                    >  6:351177/1‑102 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                                    <  5:351177/102‑1 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                               >  7:214929/1‑139 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                               >  5:184337/1‑139 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                               >  7:393048/1‑139 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                               >  4:280961/1‑139 (MQ=255)
                                                                                      tgGATGTCAAGCTATGCCGGCAATATAATCGGAGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCATCGCTAAGGTACTTTTTGAGGAGCCTACTGTTCATTACTTTTTGATTCATTTGGAAGAGCACAAAATGGAgccgccgccta                                               >  8:62414/1‑134 (MQ=255)
                                                                                      tgGATGTCAAGCTATCCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑ACTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGACCACAAAATGGAGCCGCCGGCtt                                               >  5:13240/1‑139 (MQ=255)
                                                                                        gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTga                                                                                                             <  1:142090/75‑1 (MQ=255)
                                                                                        gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTga                                                                                                             >  2:142090/1‑75 (MQ=255)
                                                                                        gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                        >  4:148964/1‑112 (MQ=255)
                                                                                        gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                        <  3:148964/112‑1 (MQ=255)
                                                                                        gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                   <  3:108495/117‑1 (MQ=255)
                                                                                        gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                   >  4:108495/1‑117 (MQ=255)
                                                                                        gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                             >  7:77555/1‑139 (MQ=255)
                                                                                        gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                             >  5:151933/1‑139 (MQ=255)
                                                                                        gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCGTcc                                             >  3:267139/1‑139 (MQ=255)
                                                                                            tCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CATGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGaat                                         <  7:305156/139‑2 (MQ=255)
                                                                                             cAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTGCCGaatt                                        >  2:147440/1‑137 (MQ=255)
                                                                                             cAAGCTATGCCGGCAATTTAATCGGCGCCATTCAGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                            >  4:353539/1‑71 (MQ=255)
                                                                                             cAAGCTATGCCGGCAATTTAATCGGCGCCATTCAGTTTGCCAT‑‑‑‑‑CATGATCAGCGCGACGGGACTTTTTgag                                                                                                            <  3:353539/71‑1 (MQ=255)
                                                                                                   aTGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCTGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                  >  4:284862/1‑139 (MQ=255)
                                                                                                    tGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                  <  3:55376/138‑1 (MQ=255)
                                                                                                     gCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                  >  3:351032/1‑137 (MQ=255)
                                                                                                     gCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                  >  8:376780/1‑137 (MQ=255)
                                                                                                      ccGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCa                                <  6:184337/138‑1 (MQ=255)
                                                                                                         gCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCagag                             >  4:226915/1‑138 (MQ=255)
                                                                                                          cAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgga                           <  2:57707/139‑2 (MQ=255)
                                                                                                          cAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgg                            >  4:360245/1‑138 (MQ=255)
                                                                                                             tttaagcGGCGCCATTCTGTGTCCCAG‑‑‑‑‑CCGGACCCGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATCCATTGGCCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATg                        <  6:129006/133‑1 (MQ=255)
                                                                                                                 aTCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCtg                     <  8:214929/138‑1 (MQ=255)
                                                                                                                           ttCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTTGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCt          >  5:122145/1‑139 (MQ=255)
                                                                                                                                tttGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtgt     >  1:34123/1‑139 (MQ=255)
                                                                                                                                   gCCAT‑‑‑‑‑CCTGTTCAGCGCGCCGGGACTTTTTGTGGAGCGTTCTGTTCATTCCTTTTTGATTCATTTGGCAGACCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGcc  <  5:48832/139‑1 (MQ=255)
                                                                                                                                   gCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCCGAGGAATGCTGTGCAATTGGCTTGTGTGcc  <  6:377687/139‑1 (MQ=255)
                                                                                                                                   gCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGCATGCTGTGCAATTGGCTTGTGTGcc  >  2:89402/1‑139 (MQ=255)
                                                                                                                                   gCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGcc  >  3:248779/1‑139 (MQ=255)
                                                                                                                                             |                                                                                                                                     
GCGGAGATTTATTTACTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCAT‑‑‑‑‑TCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCC  >  CP006881/3723422‑3723691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A